RNA–Protein interactions for RNA: ENST00000569446.2

SCRT1-201, Transcript of scratch family transcriptional repressor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCRT1, Length 3,779 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCRT1-201ENST00000569446 NISCHQ9Y2I1 1504 aa38.79■■■■□ 3.8
SCRT1-201ENST00000569446 DCAF8L2P0C7V8 631 aa35.96■■■■□ 3.35
SCRT1-201ENST00000569446 SHROOM4Q9ULL8 1493 aa35.95■■■■□ 3.35
SCRT1-201ENST00000569446 SUPT5HO00267 1087 aaKnown RBP35.71■■■■□ 3.31
SCRT1-201ENST00000569446 EHMT2Q96KQ7 1210 aa34■■■■□ 3.03
SCRT1-201ENST00000569446 PCGF6Q9BYE7 350 aa33.79■■■■□ 3
SCRT1-201ENST00000569446 FAM9AQ8IZU1 332 aaPredicted RBP33.42■■■□□ 2.94
SCRT1-201ENST00000569446 CHIC1Q5VXU3 224 aa33.4■■■□□ 2.94
SCRT1-201ENST00000569446 LOC105371045A0A1W2PR82 267 aa33.3■■■□□ 2.92
SCRT1-201ENST00000569446 PPARGC1BQ86YN6 1023 aaKnown RBP33.03■■■□□ 2.88
SCRT1-201ENST00000569446 HRCP23327 699 aa32.82■■■□□ 2.84
SCRT1-201ENST00000569446 TTBK1Q5TCY1 1321 aaPredicted RBP32.79■■■□□ 2.84
SCRT1-201ENST00000569446 TRIM41Q8WV44 630 aa32.68■■■□□ 2.82
SCRT1-201ENST00000569446 MYO15BQ96JP2 1530 aa32.59■■■□□ 2.81
SCRT1-201ENST00000569446 ZCCHC6Q5VYS8 1495 aaKnown RBP32.51■■■□□ 2.8
SCRT1-201ENST00000569446 TRIM26Q12899 539 aaPredicted RBP32.16■■■□□ 2.74
SCRT1-201ENST00000569446 CCDC180Q9P1Z9 1646 aa32.09■■■□□ 2.73
SCRT1-201ENST00000569446 RANGAP1P46060 587 aaPredicted RBP31.99■■■□□ 2.71
SCRT1-201ENST00000569446 ABCC9O60706 1549 aa31.82■■■□□ 2.68
SCRT1-201ENST00000569446 CCER1Q8TC90 406 aaPredicted RBP31.79■■■□□ 2.68
SCRT1-201ENST00000569446 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.67■■■□□ 2.66
SCRT1-201ENST00000569446 UBTFP17480 764 aaKnown RBP31.61■■■□□ 2.65
SCRT1-201ENST00000569446 SCRIBQ14160 1630 aa31.56■■■□□ 2.64
SCRT1-201ENST00000569446 ZEB1P37275 1124 aaPredicted RBP31.49■■■□□ 2.63
SCRT1-201ENST00000569446 PABPN1Q86U42 306 aaKnown RBP eCLIP31.36■■■□□ 2.61
SCRT1-201ENST00000569446 DCAF1Q9Y4B6 1507 aa31.25■■■□□ 2.59
SCRT1-201ENST00000569446 RSF1Q96T23 1441 aaPredicted RBP31.25■■■□□ 2.59
SCRT1-201ENST00000569446 YTHDC1Q96MU7 727 aaKnown RBP31.24■■■□□ 2.59
SCRT1-201ENST00000569446 APLP2Q06481 763 aa31.14■■■□□ 2.58
SCRT1-201ENST00000569446 HNRNPUL2Q1KMD3 747 aaKnown RBP31.14■■■□□ 2.58
SCRT1-201ENST00000569446 CECR2Q9BXF3 1484 aa30.95■■■□□ 2.54
SCRT1-201ENST00000569446 DIEXFQ68CQ4 756 aaKnown RBP30.8■■■□□ 2.52
SCRT1-201ENST00000569446 RB1CC1Q8TDY2 1594 aa30.79■■■□□ 2.52
SCRT1-201ENST00000569446 ITGAEP38570 1179 aa30.74■■■□□ 2.51
SCRT1-201ENST00000569446 CENPBP07199 599 aaPredicted RBP30.7■■■□□ 2.51
SCRT1-201ENST00000569446 ATP1B4Q9UN42 357 aaPredicted RBP30.68■■■□□ 2.5
SCRT1-201ENST00000569446 SCAF1Q9H7N4 1312 aaKnown RBP30.6■■■□□ 2.49
SCRT1-201ENST00000569446 CSRNP3Q8WYN3 585 aa30.58■■■□□ 2.49
SCRT1-201ENST00000569446 MROH2BQ7Z745 1585 aa30.51■■■□□ 2.48
SCRT1-201ENST00000569446 GTF3C3Q9Y5Q9 886 aa30.5■■■□□ 2.47
SCRT1-201ENST00000569446 NEUROD1Q13562 356 aa30.43■■■□□ 2.46
SCRT1-201ENST00000569446 ACIN1Q9UKV3 1341 aaKnown RBP30.28■■■□□ 2.44
SCRT1-201ENST00000569446 SOGA1O94964 1423 aa30.25■■■□□ 2.43
SCRT1-201ENST00000569446 WIZO95785 1651 aa30.22■■■□□ 2.43
SCRT1-201ENST00000569446 ABCC8Q09428 1581 aa30.22■■■□□ 2.43
SCRT1-201ENST00000569446 ZNF316A6NFI3 1004 aaPredicted RBP30.16■■■□□ 2.42
SCRT1-201ENST00000569446 CCDC88BA6NC98 1476 aa30.14■■■□□ 2.42
SCRT1-201ENST00000569446 CEP162Q5TB80 1403 aa30.14■■■□□ 2.42
SCRT1-201ENST00000569446 PELP1Q8IZL8 1130 aaKnown RBP30.06■■■□□ 2.4
SCRT1-201ENST00000569446 NACADO15069 1562 aa30.05■■■□□ 2.4
SCRT1-201ENST00000569446 P3H3Q8IVL6 736 aa29.99■■■□□ 2.39
SCRT1-201ENST00000569446 MIER1Q8N108 512 aa29.97■■■□□ 2.39
SCRT1-201ENST00000569446 RUSC2Q8N2Y8 1516 aa29.94■■■□□ 2.38
SCRT1-201ENST00000569446 FAM50AQ14320 339 aaKnown RBP29.84■■■□□ 2.37
SCRT1-201ENST00000569446 BAZ1AQ9NRL2 1556 aaPredicted RBP29.81■■■□□ 2.36
SCRT1-201ENST00000569446 WRNQ14191 1432 aaPredicted RBP eCLIP29.76■■■□□ 2.36
SCRT1-201ENST00000569446 CLIP1P30622 1438 aa29.76■■■□□ 2.35
SCRT1-201ENST00000569446 TNIKQ9UKE5 1360 aa29.74■■■□□ 2.35
SCRT1-201ENST00000569446 CNGB1Q14028 1251 aaPredicted RBP29.68■■■□□ 2.34
SCRT1-201ENST00000569446 BCANQ96GW7 911 aa29.68■■■□□ 2.34
SCRT1-201ENST00000569446 HIRIP3Q9BW71 556 aaPredicted RBP29.62■■■□□ 2.33
SCRT1-201ENST00000569446 GOLGA3Q08378 1498 aa29.6■■■□□ 2.33
SCRT1-201ENST00000569446 ARID3CA6NKF2 412 aa29.55■■■□□ 2.32
SCRT1-201ENST00000569446 KANK4Q5T7N3 995 aaPredicted RBP29.5■■■□□ 2.31
SCRT1-201ENST00000569446 TOP2AP11388 1531 aaKnown RBP29.39■■■□□ 2.29
SCRT1-201ENST00000569446 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
SCRT1-201ENST00000569446 DDX10Q13206 875 aaKnown RBP29.36■■■□□ 2.29
SCRT1-201ENST00000569446 EEA1Q15075 1411 aa29.36■■■□□ 2.29
SCRT1-201ENST00000569446 CEP164Q9UPV0 1460 aa29.32■■■□□ 2.28
SCRT1-201ENST00000569446 SMARCA4P51532 1647 aa29.29■■■□□ 2.28
SCRT1-201ENST00000569446 POLR3GLQ9BT43 218 aa29.28■■■□□ 2.28
SCRT1-201ENST00000569446 RAPGEF2Q9Y4G8 1499 aa29.28■■■□□ 2.28
SCRT1-201ENST00000569446 SMARCA2P51531 1590 aa29.26■■■□□ 2.27
SCRT1-201ENST00000569446 SIN3AQ96ST3 1273 aa29.22■■■□□ 2.27
SCRT1-201ENST00000569446 NEFLP07196 543 aa29.22■■■□□ 2.27
SCRT1-201ENST00000569446 TRIM52Q96A61 297 aa29.15■■■□□ 2.26
SCRT1-201ENST00000569446 VPS8Q8N3P4 1428 aa29.15■■■□□ 2.26
SCRT1-201ENST00000569446 KCNH8Q96L42 1107 aa29.08■■■□□ 2.25
SCRT1-201ENST00000569446 CHIC2Q9UKJ5 165 aa29.07■■■□□ 2.24
SCRT1-201ENST00000569446 UNC13AQ9UPW8 1703 aa29.03■■■□□ 2.24
SCRT1-201ENST00000569446 FKBP8Q14318 412 aa29■■■□□ 2.23
SCRT1-201ENST00000569446 ATAD2BQ9ULI0 1458 aa28.99■■■□□ 2.23
SCRT1-201ENST00000569446 ANP32CO43423 234 aa28.92■■■□□ 2.22
SCRT1-201ENST00000569446 KIF27Q86VH2 1401 aa28.92■■■□□ 2.22
SCRT1-201ENST00000569446 SENP3-EIF4A1A0A087X0R7 540 aa28.91■■■□□ 2.22
SCRT1-201ENST00000569446 ZNF326Q5BKZ1 582 aaKnown RBP28.9■■■□□ 2.22
SCRT1-201ENST00000569446 SYNJ1O43426 1573 aa28.87■■■□□ 2.21
SCRT1-201ENST00000569446 IRX6P78412 446 aaPredicted RBP28.86■■■□□ 2.21
SCRT1-201ENST00000569446 CCNB3Q8WWL7 1395 aa28.85■■■□□ 2.21
SCRT1-201ENST00000569446 BICRAQ9NZM4 1560 aa28.84■■■□□ 2.21
SCRT1-201ENST00000569446 RRP7BPQ9NSQ0 103 aa28.82■■■□□ 2.2
SCRT1-201ENST00000569446 CUX2O14529 1486 aa28.8■■■□□ 2.2
SCRT1-201ENST00000569446 DHX57Q6P158 1386 aaKnown RBP28.8■■■□□ 2.2
SCRT1-201ENST00000569446 SUPT16HQ9Y5B9 1047 aaKnown RBP28.8■■■□□ 2.2
SCRT1-201ENST00000569446 FBLN2P98095 1184 aa28.76■■■□□ 2.19
SCRT1-201ENST00000569446 TONSLQ96HA7 1378 aa28.73■■■□□ 2.19
SCRT1-201ENST00000569446 RAB3GAP2Q9H2M9 1393 aa28.72■■■□□ 2.19
SCRT1-201ENST00000569446 ERICH6Q7L0X2 663 aa28.71■■■□□ 2.19
SCRT1-201ENST00000569446 CARMIL1Q5VZK9 1371 aa28.7■■■□□ 2.18
SCRT1-201ENST00000569446 HNRNPUQ00839 825 aaKnown RBP eCLIP28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms