RNA–Protein interactions for RNA: ENST00000538744.5

DDX55-205, Transcript of DEAD-box helicase 55, humanhuman

TSL 5 BASIC

Gene DDX55, Length 1,735 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-205ENST00000538744 NISCHQ9Y2I1 1504 aa45.36■■■■■ 4.85
DDX55-205ENST00000538744 CCDC180Q9P1Z9 1646 aa39.42■■■■□ 3.9
DDX55-205ENST00000538744 ZCCHC6Q5VYS8 1495 aaKnown RBP38.19■■■■□ 3.7
DDX55-205ENST00000538744 DCAF1Q9Y4B6 1507 aa37.5■■■■□ 3.59
DDX55-205ENST00000538744 DCAF8L2P0C7V8 631 aa37.31■■■■□ 3.56
DDX55-205ENST00000538744 SHROOM4Q9ULL8 1493 aa37.29■■■■□ 3.56
DDX55-205ENST00000538744 MYO15BQ96JP2 1530 aa36.9■■■■□ 3.5
DDX55-205ENST00000538744 ABCC9O60706 1549 aa36.89■■■■□ 3.5
DDX55-205ENST00000538744 NACADO15069 1562 aa36.59■■■■□ 3.45
DDX55-205ENST00000538744 SCRIBQ14160 1630 aa36.3■■■■□ 3.4
DDX55-205ENST00000538744 RB1CC1Q8TDY2 1594 aa36.19■■■■□ 3.38
DDX55-205ENST00000538744 SUPT5HO00267 1087 aaKnown RBP36.05■■■■□ 3.36
DDX55-205ENST00000538744 UNC13AQ9UPW8 1703 aa35.54■■■■□ 3.28
DDX55-205ENST00000538744 RSF1Q96T23 1441 aaPredicted RBP35.32■■■■□ 3.24
DDX55-205ENST00000538744 CECR2Q9BXF3 1484 aa35.2■■■■□ 3.23
DDX55-205ENST00000538744 BICRAQ9NZM4 1560 aa35.09■■■■□ 3.21
DDX55-205ENST00000538744 MROH2BQ7Z745 1585 aa35.06■■■■□ 3.2
DDX55-205ENST00000538744 BAZ1AQ9NRL2 1556 aaPredicted RBP35.01■■■■□ 3.19
DDX55-205ENST00000538744 WIZO95785 1651 aa34.84■■■■□ 3.17
DDX55-205ENST00000538744 PABPN1Q86U42 306 aaKnown RBP eCLIP34.83■■■■□ 3.17
DDX55-205ENST00000538744 SMARCA4P51532 1647 aa34.82■■■■□ 3.16
DDX55-205ENST00000538744 CHIC1Q5VXU3 224 aa34.71■■■■□ 3.15
DDX55-205ENST00000538744 TOP2AP11388 1531 aaKnown RBP34.47■■■■□ 3.11
DDX55-205ENST00000538744 PEG3Q9GZU2 1588 aa34.36■■■■□ 3.09
DDX55-205ENST00000538744 SMARCA2P51531 1590 aa34.17■■■■□ 3.06
DDX55-205ENST00000538744 ATAD2BQ9ULI0 1458 aa34.11■■■■□ 3.05
DDX55-205ENST00000538744 CCDC88BA6NC98 1476 aa34.1■■■■□ 3.05
DDX55-205ENST00000538744 EIF4G1Q04637 1599 aaKnown RBP34.05■■■■□ 3.04
DDX55-205ENST00000538744 BAZ1BQ9UIG0 1483 aaKnown RBP33.96■■■■□ 3.03
DDX55-205ENST00000538744 TRIM41Q8WV44 630 aa33.87■■■■□ 3.01
DDX55-205ENST00000538744 HMGXB3Q12766 1538 aa33.77■■■■□ 3
DDX55-205ENST00000538744 NCAPD3P42695 1498 aa33.73■■■□□ 2.99
DDX55-205ENST00000538744 ABCC8Q09428 1581 aa33.54■■■□□ 2.96
DDX55-205ENST00000538744 CC2D2AQ9P2K1 1620 aa33.41■■■□□ 2.94
DDX55-205ENST00000538744 LOC105371045A0A1W2PR82 267 aa33.39■■■□□ 2.94
DDX55-205ENST00000538744 FAM9AQ8IZU1 332 aaPredicted RBP33.26■■■□□ 2.92
DDX55-205ENST00000538744 WRNQ14191 1432 aaPredicted RBP eCLIP33.25■■■□□ 2.91
DDX55-205ENST00000538744 SYNJ1O43426 1573 aa33.13■■■□□ 2.89
DDX55-205ENST00000538744 CFTRP13569 1480 aa33.1■■■□□ 2.89
DDX55-205ENST00000538744 PRDM2Q13029 1718 aa33.08■■■□□ 2.89
DDX55-205ENST00000538744 EEA1Q15075 1411 aa32.99■■■□□ 2.87
DDX55-205ENST00000538744 TOP2BQ02880 1626 aa32.96■■■□□ 2.87
DDX55-205ENST00000538744 SOGA1O94964 1423 aa32.96■■■□□ 2.87
DDX55-205ENST00000538744 BIVM-ERCC5R4GMW8 1640 aa32.95■■■□□ 2.86
DDX55-205ENST00000538744 CADPSQ9ULU8 1353 aa32.9■■■□□ 2.86
DDX55-205ENST00000538744 RUSC2Q8N2Y8 1516 aa32.81■■■□□ 2.84
DDX55-205ENST00000538744 EHMT2Q96KQ7 1210 aa32.79■■■□□ 2.84
DDX55-205ENST00000538744 CUX1P39880 1505 aa32.77■■■□□ 2.84
DDX55-205ENST00000538744 CSRNP3Q8WYN3 585 aa32.74■■■□□ 2.83
DDX55-205ENST00000538744 KIF21BO75037 1637 aa32.58■■■□□ 2.81
DDX55-205ENST00000538744 LAMC3Q9Y6N6 1575 aa32.57■■■□□ 2.8
DDX55-205ENST00000538744 GOLGA3Q08378 1498 aa32.57■■■□□ 2.8
DDX55-205ENST00000538744 FANCD2Q9BXW9 1451 aa32.57■■■□□ 2.8
DDX55-205ENST00000538744 CEP164Q9UPV0 1460 aa32.53■■■□□ 2.8
DDX55-205ENST00000538744 TNIKQ9UKE5 1360 aa32.51■■■□□ 2.8
DDX55-205ENST00000538744 NESP48681 1621 aa32.51■■■□□ 2.79
DDX55-205ENST00000538744 CEP162Q5TB80 1403 aa32.39■■■□□ 2.78
DDX55-205ENST00000538744 KIF27Q86VH2 1401 aa32.38■■■□□ 2.77
DDX55-205ENST00000538744 UBTFP17480 764 aaKnown RBP32.37■■■□□ 2.77
DDX55-205ENST00000538744 DNMBPQ6XZF7 1577 aa32.37■■■□□ 2.77
DDX55-205ENST00000538744 DNAJC5BQ9UF47 199 aa32.35■■■□□ 2.77
DDX55-205ENST00000538744 FGD5Q6ZNL6 1462 aa32.35■■■□□ 2.77
DDX55-205ENST00000538744 PCGF6Q9BYE7 350 aa32.29■■■□□ 2.76
DDX55-205ENST00000538744 RAPGEF2Q9Y4G8 1499 aa32.28■■■□□ 2.76
DDX55-205ENST00000538744 ERICH3Q5RHP9 1530 aa32.28■■■□□ 2.76
DDX55-205ENST00000538744 PDS5BQ9NTI5 1447 aa32.27■■■□□ 2.76
DDX55-205ENST00000538744 TOPBP1Q92547 1522 aa32.26■■■□□ 2.76
DDX55-205ENST00000538744 PRXQ9BXM0 1461 aa32.25■■■□□ 2.75
DDX55-205ENST00000538744 CUX2O14529 1486 aa32.21■■■□□ 2.75
DDX55-205ENST00000538744 TRIM26Q12899 539 aaPredicted RBP32.21■■■□□ 2.75
DDX55-205ENST00000538744 KIF21AQ7Z4S6 1674 aa32.18■■■□□ 2.74
DDX55-205ENST00000538744 URB2Q14146 1524 aaKnown RBP32.14■■■□□ 2.74
DDX55-205ENST00000538744 POLA1P09884 1462 aaPredicted RBP32.13■■■□□ 2.73
DDX55-205ENST00000538744 ABCA10Q8WWZ4 1543 aa32.07■■■□□ 2.72
DDX55-205ENST00000538744 CLIP1P30622 1438 aa32.05■■■□□ 2.72
DDX55-205ENST00000538744 RAD54L2Q9Y4B4 1467 aa32.02■■■□□ 2.72
DDX55-205ENST00000538744 IGF1RP08069 1367 aa32.01■■■□□ 2.72
DDX55-205ENST00000538744 WDR97A6NE52 1622 aa31.99■■■□□ 2.71
DDX55-205ENST00000538744 CARMIL1Q5VZK9 1371 aa31.88■■■□□ 2.69
DDX55-205ENST00000538744 MRC2Q9UBG0 1479 aa31.86■■■□□ 2.69
DDX55-205ENST00000538744 VPS8Q8N3P4 1428 aa31.82■■■□□ 2.68
DDX55-205ENST00000538744 CUL7Q14999 1698 aa31.82■■■□□ 2.68
DDX55-205ENST00000538744 PPARGC1BQ86YN6 1023 aaKnown RBP31.81■■■□□ 2.68
DDX55-205ENST00000538744 ABCA5Q8WWZ7 1642 aa31.8■■■□□ 2.68
DDX55-205ENST00000538744 TARBP1Q13395 1621 aaKnown RBP31.77■■■□□ 2.68
DDX55-205ENST00000538744 RANGAP1P46060 587 aaPredicted RBP31.73■■■□□ 2.67
DDX55-205ENST00000538744 HRCP23327 699 aa31.7■■■□□ 2.67
DDX55-205ENST00000538744 ARAP1Q96P48 1450 aa31.69■■■□□ 2.66
DDX55-205ENST00000538744 GAPVD1Q14C86 1478 aa31.68■■■□□ 2.66
DDX55-205ENST00000538744 WDR62O43379 1518 aa31.68■■■□□ 2.66
DDX55-205ENST00000538744 TDRD9Q8NDG6 1382 aaKnown RBP31.66■■■□□ 2.66
DDX55-205ENST00000538744 ARHGAP35Q9NRY4 1499 aa31.61■■■□□ 2.65
DDX55-205ENST00000538744 ERCC6Q03468 1493 aa31.59■■■□□ 2.65
DDX55-205ENST00000538744 CTTNBP2Q8WZ74 1663 aa31.56■■■□□ 2.64
DDX55-205ENST00000538744 PBRM1Q86U86 1689 aa31.56■■■□□ 2.64
DDX55-205ENST00000538744 IFT140Q96RY7 1462 aa31.52■■■□□ 2.64
DDX55-205ENST00000538744 APLP2Q06481 763 aa31.52■■■□□ 2.64
DDX55-205ENST00000538744 THOC2Q8NI27 1593 aaKnown RBP31.51■■■□□ 2.64
DDX55-205ENST00000538744 TTBK1Q5TCY1 1321 aaPredicted RBP31.5■■■□□ 2.63
DDX55-205ENST00000538744 AQRO60306 1485 aaKnown RBP eCLIP31.4■■■□□ 2.621e-6■■■■■ 42.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms