RNA–Protein interactions for RNA: ENST00000565154.5

PKM-215, Transcript of pyruvate kinase M1/2, human

APPRIS ALT1 TSL 2 BASIC

Gene PKM, Length 2,004 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKM-215	ENST00000565154	NISCH	Q9Y2I1	1504 aa		45.44	■■■■■ 4.86
PKM-215	ENST00000565154	CCDC180	Q9P1Z9	1646 aa		39.53	■■■■□ 3.92
PKM-215	ENST00000565154	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38.28	■■■■□ 3.72
PKM-215	ENST00000565154	DCAF1	Q9Y4B6	1507 aa		37.59	■■■■□ 3.61
PKM-215	ENST00000565154	SHROOM4	Q9ULL8	1493 aa		37.31	■■■■□ 3.56
PKM-215	ENST00000565154	DCAF8L2	P0C7V8	631 aa		37.26	■■■■□ 3.56
PKM-215	ENST00000565154	MYO15B	Q96JP2	1530 aa		36.98	■■■■□ 3.51
PKM-215	ENST00000565154	ABCC9	O60706	1549 aa		36.91	■■■■□ 3.5
PKM-215	ENST00000565154	NACAD	O15069	1562 aa		36.64	■■■■□ 3.46
PKM-215	ENST00000565154	SCRIB	Q14160	1630 aa		36.38	■■■■□ 3.41
PKM-215	ENST00000565154	RB1CC1	Q8TDY2	1594 aa		36.24	■■■■□ 3.39
PKM-215	ENST00000565154	SUPT5H	O00267	1087 aa	Known RBP	36.05	■■■■□ 3.36
PKM-215	ENST00000565154	UNC13A	Q9UPW8	1703 aa		35.68	■■■■□ 3.3
PKM-215	ENST00000565154	RSF1	Q96T23	1441 aa	Predicted RBP	35.38	■■■■□ 3.25
PKM-215	ENST00000565154	CECR2	Q9BXF3	1484 aa		35.26	■■■■□ 3.23
PKM-215	ENST00000565154	BICRA	Q9NZM4	1560 aa		35.17	■■■■□ 3.22
PKM-215	ENST00000565154	MROH2B	Q7Z745	1585 aa		35.13	■■■■□ 3.21
PKM-215	ENST00000565154	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.08	■■■■□ 3.21
PKM-215	ENST00000565154	WIZ	O95785	1651 aa		34.92	■■■■□ 3.18
PKM-215	ENST00000565154	SMARCA4	P51532	1647 aa		34.9	■■■■□ 3.18
PKM-215	ENST00000565154	PABPN1	Q86U42	306 aa	Known RBP eCLIP	34.81	■■■■□ 3.16
PKM-215	ENST00000565154	CHIC1	Q5VXU3	224 aa		34.72	■■■■□ 3.15
PKM-215	ENST00000565154	TOP2A	P11388	1531 aa	Known RBP	34.54	■■■■□ 3.12
PKM-215	ENST00000565154	PEG3	Q9GZU2	1588 aa		34.45	■■■■□ 3.11
PKM-215	ENST00000565154	SMARCA2	P51531	1590 aa		34.24	■■■■□ 3.07
PKM-215	ENST00000565154	EIF4G1	Q04637	1599 aa	Known RBP	34.19	■■■■□ 3.06
PKM-215	ENST00000565154	ATAD2B	Q9ULI0	1458 aa		34.15	■■■■□ 3.06
PKM-215	ENST00000565154	CCDC88B	A6NC98	1476 aa		34.14	■■■■□ 3.06
PKM-215	ENST00000565154	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.01	■■■■□ 3.03
PKM-215	ENST00000565154	TRIM41	Q8WV44	630 aa		33.86	■■■■□ 3.01
PKM-215	ENST00000565154	HMGXB3	Q12766	1538 aa		33.83	■■■■□ 3.01
PKM-215	ENST00000565154	NCAPD3	P42695	1498 aa		33.77	■■■■□ 3
PKM-215	ENST00000565154	ABCC8	Q09428	1581 aa		33.62	■■■□□ 2.97
PKM-215	ENST00000565154	CC2D2A	Q9P2K1	1620 aa		33.46	■■■□□ 2.95
PKM-215	ENST00000565154	LOC105371045	A0A1W2PR82	267 aa		33.4	■■■□□ 2.94
PKM-215	ENST00000565154	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.29	■■■□□ 2.92	1e-7	■■■■□ 20.9
PKM-215	ENST00000565154	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.25	■■■□□ 2.91
PKM-215	ENST00000565154	SYNJ1	O43426	1573 aa		33.22	■■■□□ 2.91
PKM-215	ENST00000565154	PRDM2	Q13029	1718 aa		33.2	■■■□□ 2.91
PKM-215	ENST00000565154	CFTR	P13569	1480 aa		33.16	■■■□□ 2.9
PKM-215	ENST00000565154	TOP2B	Q02880	1626 aa		33.04	■■■□□ 2.88
PKM-215	ENST00000565154	BIVM-ERCC5	R4GMW8	1640 aa		33.04	■■■□□ 2.88
PKM-215	ENST00000565154	EEA1	Q15075	1411 aa		33.03	■■■□□ 2.88
PKM-215	ENST00000565154	SOGA1	O94964	1423 aa		33.01	■■■□□ 2.87
PKM-215	ENST00000565154	CADPS	Q9ULU8	1353 aa		32.91	■■■□□ 2.86
PKM-215	ENST00000565154	RUSC2	Q8N2Y8	1516 aa		32.87	■■■□□ 2.85
PKM-215	ENST00000565154	CUX1	P39880	1505 aa		32.83	■■■□□ 2.85
PKM-215	ENST00000565154	EHMT2	Q96KQ7	1210 aa		32.77	■■■□□ 2.84
PKM-215	ENST00000565154	CSRNP3	Q8WYN3	585 aa		32.73	■■■□□ 2.83
PKM-215	ENST00000565154	KIF21B	O75037	1637 aa		32.66	■■■□□ 2.82
PKM-215	ENST00000565154	LAMC3	Q9Y6N6	1575 aa		32.62	■■■□□ 2.81
PKM-215	ENST00000565154	GOLGA3	Q08378	1498 aa		32.61	■■■□□ 2.81
PKM-215	ENST00000565154	FANCD2	Q9BXW9	1451 aa		32.6	■■■□□ 2.81
PKM-215	ENST00000565154	CEP164	Q9UPV0	1460 aa		32.57	■■■□□ 2.81
PKM-215	ENST00000565154	NES	P48681	1621 aa		32.55	■■■□□ 2.8
PKM-215	ENST00000565154	TNIK	Q9UKE5	1360 aa		32.54	■■■□□ 2.8
PKM-215	ENST00000565154	CEP162	Q5TB80	1403 aa		32.44	■■■□□ 2.78
PKM-215	ENST00000565154	DNMBP	Q6XZF7	1577 aa		32.43	■■■□□ 2.78
PKM-215	ENST00000565154	KIF27	Q86VH2	1401 aa		32.4	■■■□□ 2.78
PKM-215	ENST00000565154	FGD5	Q6ZNL6	1462 aa		32.4	■■■□□ 2.78
PKM-215	ENST00000565154	DNAJC5B	Q9UF47	199 aa		32.38	■■■□□ 2.77
PKM-215	ENST00000565154	UBTF	P17480	764 aa	Known RBP	32.35	■■■□□ 2.77
PKM-215	ENST00000565154	ERICH3	Q5RHP9	1530 aa		32.35	■■■□□ 2.77
PKM-215	ENST00000565154	RAPGEF2	Q9Y4G8	1499 aa		32.34	■■■□□ 2.77
PKM-215	ENST00000565154	PCGF6	Q9BYE7	350 aa		32.31	■■■□□ 2.76
PKM-215	ENST00000565154	PRX	Q9BXM0	1461 aa		32.31	■■■□□ 2.76
PKM-215	ENST00000565154	TOPBP1	Q92547	1522 aa		32.31	■■■□□ 2.76
PKM-215	ENST00000565154	PDS5B	Q9NTI5	1447 aa		32.28	■■■□□ 2.76
PKM-215	ENST00000565154	KIF21A	Q7Z4S6	1674 aa		32.27	■■■□□ 2.76
PKM-215	ENST00000565154	CUX2	O14529	1486 aa		32.24	■■■□□ 2.75
PKM-215	ENST00000565154	TRIM26	Q12899	539 aa	Predicted RBP	32.21	■■■□□ 2.75
PKM-215	ENST00000565154	URB2	Q14146	1524 aa	Known RBP	32.18	■■■□□ 2.74
PKM-215	ENST00000565154	POLA1	P09884	1462 aa	Predicted RBP	32.18	■■■□□ 2.74
PKM-215	ENST00000565154	ABCA10	Q8WWZ4	1543 aa		32.12	■■■□□ 2.73
PKM-215	ENST00000565154	WDR97	A6NE52	1622 aa		32.1	■■■□□ 2.73
PKM-215	ENST00000565154	CLIP1	P30622	1438 aa		32.08	■■■□□ 2.73
PKM-215	ENST00000565154	RAD54L2	Q9Y4B4	1467 aa		32.06	■■■□□ 2.72
PKM-215	ENST00000565154	IGF1R	P08069	1367 aa		32.04	■■■□□ 2.72
PKM-215	ENST00000565154	CUL7	Q14999	1698 aa		31.9	■■■□□ 2.7
PKM-215	ENST00000565154	ABCA5	Q8WWZ7	1642 aa		31.89	■■■□□ 2.7
PKM-215	ENST00000565154	CARMIL1	Q5VZK9	1371 aa		31.89	■■■□□ 2.7
PKM-215	ENST00000565154	MRC2	Q9UBG0	1479 aa		31.89	■■■□□ 2.7
PKM-215	ENST00000565154	VPS8	Q8N3P4	1428 aa		31.88	■■■□□ 2.69
PKM-215	ENST00000565154	TARBP1	Q13395	1621 aa	Known RBP	31.84	■■■□□ 2.69
PKM-215	ENST00000565154	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.8	■■■□□ 2.68
PKM-215	ENST00000565154	ARAP1	Q96P48	1450 aa		31.76	■■■□□ 2.68
PKM-215	ENST00000565154	WDR62	O43379	1518 aa		31.74	■■■□□ 2.67
PKM-215	ENST00000565154	HRC	P23327	699 aa		31.73	■■■□□ 2.67
PKM-215	ENST00000565154	GAPVD1	Q14C86	1478 aa		31.71	■■■□□ 2.67
PKM-215	ENST00000565154	RANGAP1	P46060	587 aa	Predicted RBP	31.71	■■■□□ 2.67
PKM-215	ENST00000565154	TDRD9	Q8NDG6	1382 aa	Known RBP	31.67	■■■□□ 2.66
PKM-215	ENST00000565154	CTTNBP2	Q8WZ74	1663 aa		31.66	■■■□□ 2.66
PKM-215	ENST00000565154	ARHGAP35	Q9NRY4	1499 aa		31.66	■■■□□ 2.66
PKM-215	ENST00000565154	PBRM1	Q86U86	1689 aa		31.65	■■■□□ 2.66
PKM-215	ENST00000565154	ERCC6	Q03468	1493 aa		31.6	■■■□□ 2.65
PKM-215	ENST00000565154	THOC2	Q8NI27	1593 aa	Known RBP	31.6	■■■□□ 2.65
PKM-215	ENST00000565154	IFT140	Q96RY7	1462 aa		31.55	■■■□□ 2.64
PKM-215	ENST00000565154	TTBK1	Q5TCY1	1321 aa	Predicted RBP	31.49	■■■□□ 2.63
PKM-215	ENST00000565154	APLP2	Q06481	763 aa		31.47	■■■□□ 2.63
PKM-215	ENST00000565154	EFCAB5	A4FU69	1503 aa		31.45	■■■□□ 2.63

Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms