Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 COX20-201ENST00000366528 568 ntTSL 2 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 PLK5-205ENST00000642079 1969 ntBASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 SLC7A5P2-201ENST00000553010 536 ntBASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC137761.2-201ENST00000561729 223 ntBASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 EEF1DP3-203ENST00000566025 782 ntBASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC145350.3-201ENST00000569033 163 ntBASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC142086.2-201ENST00000569753 217 ntBASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC27.81■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CPT2-209ENST00000636935 803 ntTSL 5 BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AP004607.4-201ENST00000530158 1459 ntBASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 KRT87P-202ENST00000534226 1464 ntBASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FXN-202ENST00000396364 980 ntTSL 5 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC27.76■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC27.76■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms