RNA–Protein interactions for RNA: ENST00000376228.9

HLA-C-201, Transcript of major histocompatibility complex, class I, C, humanhuman

APPRIS P2 BASIC

Gene HLA-C, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-201ENST00000376228 NISCHQ9Y2I1 1504 aa49.57■■■■■ 5.53
HLA-C-201ENST00000376228 CCDC180Q9P1Z9 1646 aa44.15■■■■■ 4.66
HLA-C-201ENST00000376228 ABCC9O60706 1549 aa43.39■■■■■ 4.54
HLA-C-201ENST00000376228 RB1CC1Q8TDY2 1594 aa41.61■■■■■ 4.25
HLA-C-201ENST00000376228 DCAF8L2P0C7V8 631 aa41.53■■■■■ 4.24
HLA-C-201ENST00000376228 NACADO15069 1562 aa41.49■■■■■ 4.23
HLA-C-201ENST00000376228 ZCCHC6Q5VYS8 1495 aaKnown RBP41.27■■■■■ 4.2
HLA-C-201ENST00000376228 MYO15BQ96JP2 1530 aa41.12■■■■■ 4.17
HLA-C-201ENST00000376228 DCAF1Q9Y4B6 1507 aa40.93■■■■■ 4.14
HLA-C-201ENST00000376228 UNC13AQ9UPW8 1703 aa40.83■■■■■ 4.13
HLA-C-201ENST00000376228 PABPN1Q86U42 306 aaKnown RBP eCLIP40.51■■■■■ 4.08
HLA-C-201ENST00000376228 BICRAQ9NZM4 1560 aa40.41■■■■■ 4.06
HLA-C-201ENST00000376228 SCRIBQ14160 1630 aa40.38■■■■■ 4.05
HLA-C-201ENST00000376228 DNAJC5BQ9UF47 199 aa39.92■■■■□ 3.98
HLA-C-201ENST00000376228 SHROOM4Q9ULL8 1493 aa39.81■■■■□ 3.96
HLA-C-201ENST00000376228 EIF4G1Q04637 1599 aaKnown RBP39.34■■■■□ 3.89
HLA-C-201ENST00000376228 CC2D2AQ9P2K1 1620 aa39.24■■■■□ 3.87
HLA-C-201ENST00000376228 CECR2Q9BXF3 1484 aa38.95■■■■□ 3.83
HLA-C-201ENST00000376228 SMARCA4P51532 1647 aa38.54■■■■□ 3.76
HLA-C-201ENST00000376228 BAZ1AQ9NRL2 1556 aaPredicted RBP38.42■■■■□ 3.74
HLA-C-201ENST00000376228 ATAD2BQ9ULI0 1458 aa38.31■■■■□ 3.72
HLA-C-201ENST00000376228 NCAPD3P42695 1498 aa38.26■■■■□ 3.72
HLA-C-201ENST00000376228 SMARCA2P51531 1590 aa38.25■■■■□ 3.71
HLA-C-201ENST00000376228 MROH2BQ7Z745 1585 aa38.25■■■■□ 3.71
HLA-C-201ENST00000376228 HMGXB3Q12766 1538 aa38.1■■■■□ 3.69
HLA-C-201ENST00000376228 PEG3Q9GZU2 1588 aa38.1■■■■□ 3.69
HLA-C-201ENST00000376228 BAZ1BQ9UIG0 1483 aaKnown RBP38.01■■■■□ 3.68
HLA-C-201ENST00000376228 WIZO95785 1651 aa37.89■■■■□ 3.66
HLA-C-201ENST00000376228 RSF1Q96T23 1441 aaPredicted RBP37.71■■■■□ 3.63
HLA-C-201ENST00000376228 NESP48681 1621 aa37.52■■■■□ 3.6
HLA-C-201ENST00000376228 TOP2AP11388 1531 aaKnown RBP37.4■■■■□ 3.58
HLA-C-201ENST00000376228 ERCC6Q03468 1493 aa37.38■■■■□ 3.57
HLA-C-201ENST00000376228 SUPT5HO00267 1087 aaKnown RBP37.34■■■■□ 3.57
HLA-C-201ENST00000376228 LAMC3Q9Y6N6 1575 aa37.33■■■■□ 3.57
HLA-C-201ENST00000376228 CADPSQ9ULU8 1353 aa37.15■■■■□ 3.54
HLA-C-201ENST00000376228 KIF21AQ7Z4S6 1674 aa37.13■■■■□ 3.54
HLA-C-201ENST00000376228 PDS5BQ9NTI5 1447 aa37.03■■■■□ 3.52
HLA-C-201ENST00000376228 THOC2Q8NI27 1593 aaKnown RBP36.97■■■■□ 3.51
HLA-C-201ENST00000376228 CCDC88BA6NC98 1476 aa36.96■■■■□ 3.51
HLA-C-201ENST00000376228 CUX2O14529 1486 aa36.96■■■■□ 3.51
HLA-C-201ENST00000376228 CFTRP13569 1480 aa36.92■■■■□ 3.5
HLA-C-201ENST00000376228 FANCD2Q9BXW9 1451 aa36.79■■■■□ 3.48
HLA-C-201ENST00000376228 PRDM2Q13029 1718 aa36.77■■■■□ 3.48
HLA-C-201ENST00000376228 CEP164Q9UPV0 1460 aa36.75■■■■□ 3.47
HLA-C-201ENST00000376228 MRC2Q9UBG0 1479 aa36.71■■■■□ 3.47
HLA-C-201ENST00000376228 WDR62O43379 1518 aa36.61■■■■□ 3.45
HLA-C-201ENST00000376228 URB2Q14146 1524 aaKnown RBP36.45■■■■□ 3.43
HLA-C-201ENST00000376228 TOPBP1Q92547 1522 aa36.19■■■■□ 3.38
HLA-C-201ENST00000376228 DNMBPQ6XZF7 1577 aa36.14■■■■□ 3.38
HLA-C-201ENST00000376228 ABCC8Q09428 1581 aa36.08■■■■□ 3.37
HLA-C-201ENST00000376228 DNAJC5Q9H3Z4 198 aa35.98■■■■□ 3.35
HLA-C-201ENST00000376228 IFT140Q96RY7 1462 aa35.95■■■■□ 3.35
HLA-C-201ENST00000376228 CHIC1Q5VXU3 224 aa35.89■■■■□ 3.34
HLA-C-201ENST00000376228 CUX1P39880 1505 aa35.89■■■■□ 3.34
HLA-C-201ENST00000376228 ZNF608Q9ULD9 1512 aaPredicted RBP35.88■■■■□ 3.33
HLA-C-201ENST00000376228 POLA1P09884 1462 aaPredicted RBP35.87■■■■□ 3.33
HLA-C-201ENST00000376228 TARBP1Q13395 1621 aaKnown RBP35.83■■■■□ 3.33
HLA-C-201ENST00000376228 FGD5Q6ZNL6 1462 aa35.78■■■■□ 3.32
HLA-C-201ENST00000376228 RAD54L2Q9Y4B4 1467 aa35.76■■■■□ 3.32
HLA-C-201ENST00000376228 EIF4G3O43432 1585 aaKnown RBP35.76■■■■□ 3.31
HLA-C-201ENST00000376228 SOGA1O94964 1423 aa35.69■■■■□ 3.3
HLA-C-201ENST00000376228 AQRO60306 1485 aaKnown RBP eCLIP35.64■■■■□ 3.36e-7■■■■■ 27.8
HLA-C-201ENST00000376228 SYNJ1O43426 1573 aa35.57■■■■□ 3.29
HLA-C-201ENST00000376228 WRNQ14191 1432 aaPredicted RBP eCLIP35.56■■■■□ 3.28
HLA-C-201ENST00000376228 WDR97A6NE52 1622 aa35.55■■■■□ 3.28
HLA-C-201ENST00000376228 BIVM-ERCC5R4GMW8 1640 aa35.55■■■■□ 3.28
HLA-C-201ENST00000376228 TDRD9Q8NDG6 1382 aaKnown RBP35.55■■■■□ 3.28
HLA-C-201ENST00000376228 TOP2BQ02880 1626 aa35.53■■■■□ 3.28
HLA-C-201ENST00000376228 CHD1O14646 1710 aa35.39■■■■□ 3.26
HLA-C-201ENST00000376228 OSCARQ8IYS5 282 aa35.39■■■■□ 3.26
HLA-C-201ENST00000376228 ABCA10Q8WWZ4 1543 aa35.38■■■■□ 3.25
HLA-C-201ENST00000376228 PBRM1Q86U86 1689 aa35.35■■■■□ 3.25
HLA-C-201ENST00000376228 ABCA5Q8WWZ7 1642 aa35.32■■■■□ 3.24
HLA-C-201ENST00000376228 SNAPC4Q5SXM2 1469 aa35.32■■■■□ 3.24
HLA-C-201ENST00000376228 GAPVD1Q14C86 1478 aa35.29■■■■□ 3.24
HLA-C-201ENST00000376228 GRIN2BQ13224 1484 aa35.28■■■■□ 3.24
HLA-C-201ENST00000376228 FBLN2P98095 1184 aa35.25■■■■□ 3.23
HLA-C-201ENST00000376228 TRIM41Q8WV44 630 aa35.2■■■■□ 3.23
HLA-C-201ENST00000376228 MAGI1Q96QZ7 1491 aaPredicted RBP35.2■■■■□ 3.22
HLA-C-201ENST00000376228 SYNJ2O15056 1496 aa35.08■■■■□ 3.21
HLA-C-201ENST00000376228 CHMP7Q8WUX9 453 aaPredicted RBP35.07■■■■□ 3.21
HLA-C-201ENST00000376228 ADAMTS12P58397 1594 aa34.98■■■■□ 3.19
HLA-C-201ENST00000376228 RIMBP3CA6NJZ7 1639 aa34.97■■■■□ 3.19
HLA-C-201ENST00000376228 RIMBP3BA6NNM3 1639 aa34.97■■■■□ 3.19
HLA-C-201ENST00000376228 RIMBP3Q9UFD9 1639 aa34.97■■■■□ 3.19
HLA-C-201ENST00000376228 ERICH3Q5RHP9 1530 aa34.95■■■■□ 3.19
HLA-C-201ENST00000376228 ARHGEF11O15085 1522 aa34.9■■■■□ 3.18
HLA-C-201ENST00000376228 CLASP1Q7Z460 1538 aa34.89■■■■□ 3.18
HLA-C-201ENST00000376228 GRIN2AQ12879 1464 aa34.86■■■■□ 3.17
HLA-C-201ENST00000376228 FHAD1B1AJZ9 1412 aa34.84■■■■□ 3.17
HLA-C-201ENST00000376228 KIF27Q86VH2 1401 aa34.8■■■■□ 3.16
HLA-C-201ENST00000376228 CEP170Q5SW79 1584 aa34.75■■■■□ 3.15
HLA-C-201ENST00000376228 IGF1RP08069 1367 aa34.68■■■■□ 3.14
HLA-C-201ENST00000376228 NUP160Q12769 1436 aa34.67■■■■□ 3.14
HLA-C-201ENST00000376228 CUL7Q14999 1698 aa34.65■■■■□ 3.14
HLA-C-201ENST00000376228 ARAP1Q96P48 1450 aa34.62■■■■□ 3.13
HLA-C-201ENST00000376228 CYB5RLQ6IPT4 315 aa34.57■■■■□ 3.12
HLA-C-201ENST00000376228 RUSC2Q8N2Y8 1516 aa34.56■■■■□ 3.12
HLA-C-201ENST00000376228 EEA1Q15075 1411 aa34.52■■■■□ 3.12
HLA-C-201ENST00000376228 SHROOM2Q13796 1616 aa34.49■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms