Protein–RNA interactions for Protein: O60832

DKC1, H/ACA ribonucleoprotein complex subunit 4, humanhuman

Known RBP eCLIP

Length 514 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKC1O60832 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 02e-17■■■■□ 23.1
DKC1O60832 SUGP2-213ENST00000600239 5565 ntTSL 214.99□□□□□ -0.012e-17■■■■□ 23.1
DKC1O60832 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.032e-6■■■■□ 23.1
DKC1O60832 ITGB2-220ENST00000522931 573 ntTSL 214.85□□□□□ -0.032e-6■■■■□ 23.1
DKC1O60832 ITGB2-217ENST00000521987 563 ntTSL 414.58□□□□□ -0.082e-6■■■■□ 23.1
DKC1O60832 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.112e-6■■■■□ 23.1
DKC1O60832 ACSS3-206ENST00000549175 534 ntTSL 514.14□□□□□ -0.152e-17■■■■□ 23.1
DKC1O60832 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.152e-6■■■■□ 23.1
DKC1O60832 MAP4K4-217ENST00000496989 574 ntTSL 413.05□□□□□ -0.322e-17■■■■□ 23.1
DKC1O60832 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.352e-17■■■■□ 23.1
DKC1O60832 MAP4K4-211ENST00000427603 526 ntTSL 410.75□□□□□ -0.692e-17■■■■□ 23.1
DKC1O60832 SUGP2-201ENST00000330854 3629 ntTSL 1 (best)10.45□□□□□ -0.742e-17■■■■□ 23.1
DKC1O60832 MAP4K4-220ENST00000627726 3135 ntTSL 5 BASIC10.43□□□□□ -0.742e-17■■■■□ 23.1
DKC1O60832 SOX5-215ENST00000545921 2589 ntAPPRIS ALT1 TSL 2 BASIC10.28□□□□□ -0.764e-7■■■■□ 23.1
DKC1O60832 SUGP2-206ENST00000594773 4169 ntTSL 29.99□□□□□ -0.812e-17■■■■□ 23.1
DKC1O60832 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.882e-17■■■■□ 23.1
DKC1O60832 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC9.41□□□□□ -0.92e-17■■■■□ 23.1
DKC1O60832 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC9.08□□□□□ -0.962e-17■■■■□ 23.1
DKC1O60832 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC8.84□□□□□ -0.992e-17■■■■□ 23.1
DKC1O60832 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC8.14□□□□□ -1.112e-17■■■■□ 23.1
DKC1O60832 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.73□□□□□ -1.172e-17■■■■□ 23.1
DKC1O60832 SOX5-201ENST00000367206 1816 ntTSL 27.41□□□□□ -1.224e-7■■■■□ 23.1
DKC1O60832 MAP4K4-207ENST00000417294 4251 ntTSL 56.44□□□□□ -1.382e-17■■■■□ 23.1
DKC1O60832 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.232e-7■■■■□ 23.1
DKC1O60832 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.072e-7■■■■□ 23
DKC1O60832 KANSL2-209ENST00000548701 922 ntTSL 311.03□□□□□ -0.643e-74■■■■□ 23
DKC1O60832 KANSL2-210ENST00000549463 650 ntTSL 58.73□□□□□ -1.013e-74■■■■□ 23
DKC1O60832 ATP11A-206ENST00000419631 2446 ntTSL 314.17□□□□□ -0.148e-8■■■■□ 22.9
DKC1O60832 ATP11A-210ENST00000471555 5786 ntTSL 1 (best)12.68□□□□□ -0.388e-8■■■■□ 22.9
DKC1O60832 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.191e-323■■■■□ 22.9
DKC1O60832 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.321e-323■■■■□ 22.9
DKC1O60832 SNORA19-201ENST00000384737 128 ntBASIC-1.79□□□□□ -2.71e-323■■■■□ 22.9
DKC1O60832 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.72■□□□□ 0.913e-6■■■■□ 22.9
DKC1O60832 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.443e-6■■■■□ 22.9
DKC1O60832 DAP-203ENST00000508253 785 ntTSL 216.77■□□□□ 0.283e-6■■■■□ 22.9
DKC1O60832 FGFR1-227ENST00000526570 5528 ntTSL 1 (best)13.59□□□□□ -0.233e-13■■■■□ 22.9
DKC1O60832 FGFR1-219ENST00000475621 485 ntTSL 211.42□□□□□ -0.583e-13■■■■□ 22.9
DKC1O60832 DAP-206ENST00000514882 562 ntTSL 410.66□□□□□ -0.73e-6■■■■□ 22.9
DKC1O60832 RPS11-206ENST00000600027 944 ntTSL 513.18□□□□□ -0.31e-323■■■■□ 22.8
DKC1O60832 RPS11-204ENST00000599167 1133 ntTSL 513.18□□□□□ -0.31e-323■■■■□ 22.8
DKC1O60832 RPS11-207ENST00000601216 602 ntTSL 410.63□□□□□ -0.711e-323■■■■□ 22.8
DKC1O60832 RPS11-201ENST00000270625 614 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.731e-323■■■■□ 22.8
DKC1O60832 RPS11-209ENST00000602252 751 ntTSL 29.07□□□□□ -0.961e-323■■■■□ 22.8
DKC1O60832 RPS11-202ENST00000594493 575 ntTSL 3 BASIC8.62□□□□□ -1.031e-323■■■■□ 22.8
DKC1O60832 RPS11-208ENST00000601306 547 ntTSL 38.34□□□□□ -1.071e-323■■■■□ 22.8
DKC1O60832 RPS11-203ENST00000596873 583 ntTSL 2 BASIC8.23□□□□□ -1.091e-323■■■■□ 22.8
DKC1O60832 RPS11-205ENST00000599561 430 ntTSL 5 BASIC7.65□□□□□ -1.181e-323■■■■□ 22.8
DKC1O60832 SNORD35B-201ENST00000363660 87 ntBASIC4.55□□□□□ -1.681e-323■■■■□ 22.8
DKC1O60832 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.058e-22■■■■□ 22.7
DKC1O60832 TMEM2-204ENST00000377057 2637 ntTSL 210.53□□□□□ -0.728e-22■■■■□ 22.7
DKC1O60832 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.09■□□□□ 0.811e-68■■■■□ 22.7
DKC1O60832 CCT6P1-201ENST00000434500 1544 ntBASIC13.5□□□□□ -0.251e-68■■■■□ 22.7
DKC1O60832 CCT6P1-203ENST00000443108 1170 ntTSL 2 BASIC12.58□□□□□ -0.41e-68■■■■□ 22.7
DKC1O60832 SNORA22-201ENST00000383907 134 ntBASIC1.1□□□□□ -2.231e-68■■■■□ 22.7
DKC1O60832 TULP4-206ENST00000616856 2307 ntTSL 213.22□□□□□ -0.292e-10■■■■□ 22.7
DKC1O60832 TULP4-201ENST00000367094 5170 ntTSL 1 (best) BASIC11.4□□□□□ -0.582e-10■■■■□ 22.7
DKC1O60832 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.932e-10■■■■□ 22.7
DKC1O60832 AL360169.2-201ENST00000619713 561 ntTSL 5 BASIC9.22□□□□□ -0.932e-10■■■■□ 22.7
DKC1O60832 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.27■■□□□ 1.322e-6■■■■□ 22.6
DKC1O60832 RHOT1-209ENST00000581031 3013 ntTSL 1 (best)20.11■□□□□ 0.812e-6■■■■□ 22.6
DKC1O60832 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.08■□□□□ 0.82e-6■■■■□ 22.6
DKC1O60832 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.462e-6■■■■□ 22.6
DKC1O60832 RHOT1-215ENST00000583994 3289 ntTSL 217.31■□□□□ 0.362e-6■■■■□ 22.6
DKC1O60832 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.54■□□□□ 0.242e-6■■■■□ 22.6
DKC1O60832 RHOT1-206ENST00000578205 2771 ntTSL 1 (best)4.49□□□□□ -1.692e-6■■■■□ 22.6
DKC1O60832 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.08□□□□□ -1.762e-6■■■■□ 22.6
DKC1O60832 MAD1L1-209ENST00000438959 839 ntTSL 315.56■□□□□ 0.085e-7■■■■□ 22.6
DKC1O60832 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC24.17■■□□□ 1.466e-7■■■■□ 22.6
DKC1O60832 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.446e-7■■■■□ 22.6
DKC1O60832 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.446e-7■■■■□ 22.6
DKC1O60832 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.416e-7■■■■□ 22.6
DKC1O60832 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.346e-7■■■■□ 22.6
DKC1O60832 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.336e-7■■■■□ 22.6
DKC1O60832 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.336e-7■■■■□ 22.6
DKC1O60832 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.296e-7■■■■□ 22.6
DKC1O60832 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.92■□□□□ 0.626e-7■■■■□ 22.6
DKC1O60832 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.37■□□□□ 0.536e-7■■■■□ 22.6
DKC1O60832 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.6■□□□□ 0.416e-7■■■■□ 22.6
DKC1O60832 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.38■■□□□ 1.331e-6■■■■□ 22.6
DKC1O60832 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.281e-6■■■■□ 22.6
DKC1O60832 C22orf39-204ENST00000509549 2979 ntTSL 213.37□□□□□ -0.271e-6■■■■□ 22.6
DKC1O60832 HIRA-203ENST00000452818 453 ntTSL 512.38□□□□□ -0.431e-6■■■■□ 22.6
DKC1O60832 HIRA-204ENST00000464189 560 ntTSL 412.38□□□□□ -0.431e-6■■■■□ 22.6
DKC1O60832 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.35■■□□□ 1.174e-9■■■■□ 22.5
DKC1O60832 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.144e-9■■■■□ 22.5
DKC1O60832 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.914e-9■■■■□ 22.5
DKC1O60832 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.495e-17■■■■□ 22.5
DKC1O60832 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC15.53■□□□□ 0.084e-9■■■■□ 22.5
DKC1O60832 NUP188-208ENST00000491502 534 ntTSL 315.02■□□□□ -04e-9■■■■□ 22.5
DKC1O60832 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.032e-7■■■■□ 22.5
DKC1O60832 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC14.4□□□□□ -0.14e-9■■■■□ 22.5
DKC1O60832 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC12.64□□□□□ -0.394e-9■■■■□ 22.5
DKC1O60832 SIRT5-204ENST00000397350 4382 ntTSL 1 (best) BASIC12.57□□□□□ -0.44e-9■■■■□ 22.5
DKC1O60832 NUP188-205ENST00000477069 2941 ntTSL 1 (best)12.48□□□□□ -0.414e-9■■■■□ 22.5
DKC1O60832 NCMAP-201ENST00000374392 3953 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.54e-9■■■■□ 22.5
DKC1O60832 NUP188-201ENST00000372577 5689 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.524e-9■■■■□ 22.5
DKC1O60832 TNFAIP8-202ENST00000388882 541 ntTSL 411.56□□□□□ -0.564e-9■■■■□ 22.5
DKC1O60832 HSD17B2-206ENST00000569351 1302 ntTSL 211.52□□□□□ -0.574e-9■■■■□ 22.5
DKC1O60832 PUM1-215ENST00000525948 1103 ntTSL 311.3□□□□□ -0.64e-9■■■■□ 22.5
DKC1O60832 HSD17B2-201ENST00000199936 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.684e-9■■■■□ 22.5
Retrieved 100 of 8,567 protein–RNA pairs in 161.4 ms