Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 FEM1AP4-201ENST00000443167 1987 ntBASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 BX005040.4-201ENST00000637145 1518 ntBASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC28.2■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC28.19■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CDCA4P2-201ENST00000441182 718 ntBASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC005224.4-201ENST00000583262 1652 ntBASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC055733.4-201ENST00000638462 1354 ntBASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 APTR-205ENST00000447009 902 ntTSL 2 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC073111.5-205ENST00000641717 521 ntBASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC28.16■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AC008687.6-201ENST00000596318 630 ntBASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC28.15■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.14■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC28.14■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC28.14■■■□□ 2.1
SENP3-EIF4A1A0A087X0R7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms