RNA–Protein interactions for RNA: ENST00000592155.5

PALM-208, Transcript of paralemmin, human

TSL 4 BASIC

Gene PALM, Length 2,272 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PALM-208	ENST00000592155	NISCH	Q9Y2I1	1504 aa		44.2	■■■■■ 4.67
PALM-208	ENST00000592155	CCDC180	Q9P1Z9	1646 aa		37.79	■■■■□ 3.64
PALM-208	ENST00000592155	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.38	■■■■□ 3.57
PALM-208	ENST00000592155	SHROOM4	Q9ULL8	1493 aa		37.26	■■■■□ 3.56
PALM-208	ENST00000592155	SUPT5H	O00267	1087 aa	Known RBP	36.51	■■■■□ 3.43
PALM-208	ENST00000592155	DCAF1	Q9Y4B6	1507 aa		36.42	■■■■□ 3.42
PALM-208	ENST00000592155	DCAF8L2	P0C7V8	631 aa		36.41	■■■■□ 3.42
PALM-208	ENST00000592155	CHIC1	Q5VXU3	224 aa		35.53	■■■■□ 3.28
PALM-208	ENST00000592155	MYO15B	Q96JP2	1530 aa		35.47	■■■■□ 3.27
PALM-208	ENST00000592155	ABCC9	O60706	1549 aa		35.23	■■■■□ 3.23
PALM-208	ENST00000592155	SCRIB	Q14160	1630 aa		35.16	■■■■□ 3.22
PALM-208	ENST00000592155	NACAD	O15069	1562 aa		34.94	■■■■□ 3.18
PALM-208	ENST00000592155	RSF1	Q96T23	1441 aa	Predicted RBP	34.86	■■■■□ 3.17
PALM-208	ENST00000592155	RB1CC1	Q8TDY2	1594 aa		34.52	■■■■□ 3.12
PALM-208	ENST00000592155	CECR2	Q9BXF3	1484 aa		34.36	■■■■□ 3.09
PALM-208	ENST00000592155	LOC105371045	A0A1W2PR82	267 aa		34.34	■■■■□ 3.09
PALM-208	ENST00000592155	MROH2B	Q7Z745	1585 aa		34.27	■■■■□ 3.08
PALM-208	ENST00000592155	PCGF6	Q9BYE7	350 aa		34.16	■■■■□ 3.06
PALM-208	ENST00000592155	HRC	P23327	699 aa		34.15	■■■■□ 3.06
PALM-208	ENST00000592155	TRIM41	Q8WV44	630 aa		34.14	■■■■□ 3.06
PALM-208	ENST00000592155	WIZ	O95785	1651 aa		34.08	■■■■□ 3.05
PALM-208	ENST00000592155	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34	■■■■□ 3.03
PALM-208	ENST00000592155	UNC13A	Q9UPW8	1703 aa		33.82	■■■■□ 3
PALM-208	ENST00000592155	TRIM26	Q12899	539 aa	Predicted RBP	33.7	■■■□□ 2.99
PALM-208	ENST00000592155	SMARCA4	P51532	1647 aa		33.7	■■■□□ 2.99
PALM-208	ENST00000592155	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.68	■■■□□ 2.98
PALM-208	ENST00000592155	TOP2A	P11388	1531 aa	Known RBP	33.64	■■■□□ 2.98
PALM-208	ENST00000592155	EIF4G1	Q04637	1599 aa	Known RBP	33.63	■■■□□ 2.97
PALM-208	ENST00000592155	CCDC88B	A6NC98	1476 aa		33.42	■■■□□ 2.94
PALM-208	ENST00000592155	SMARCA2	P51531	1590 aa		33.41	■■■□□ 2.94
PALM-208	ENST00000592155	BICRA	Q9NZM4	1560 aa		33.37	■■■□□ 2.93
PALM-208	ENST00000592155	PPARGC1B	Q86YN6	1023 aa	Known RBP	33.27	■■■□□ 2.92
PALM-208	ENST00000592155	EHMT2	Q96KQ7	1210 aa		33.26	■■■□□ 2.92
PALM-208	ENST00000592155	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.23	■■■□□ 2.91
PALM-208	ENST00000592155	ABCC8	Q09428	1581 aa		33.21	■■■□□ 2.91
PALM-208	ENST00000592155	PEG3	Q9GZU2	1588 aa		33.16	■■■□□ 2.9
PALM-208	ENST00000592155	ZEB1	P37275	1124 aa	Predicted RBP	32.98	■■■□□ 2.87
PALM-208	ENST00000592155	EEA1	Q15075	1411 aa		32.89	■■■□□ 2.86
PALM-208	ENST00000592155	SOGA1	O94964	1423 aa		32.86	■■■□□ 2.85
PALM-208	ENST00000592155	ATAD2B	Q9ULI0	1458 aa		32.85	■■■□□ 2.85
PALM-208	ENST00000592155	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.77	■■■□□ 2.84
PALM-208	ENST00000592155	BAZ1B	Q9UIG0	1483 aa	Known RBP	32.75	■■■□□ 2.83
PALM-208	ENST00000592155	CSRNP3	Q8WYN3	585 aa		32.74	■■■□□ 2.83
PALM-208	ENST00000592155	PELP1	Q8IZL8	1130 aa	Known RBP	32.73	■■■□□ 2.83
PALM-208	ENST00000592155	TNIK	Q9UKE5	1360 aa		32.73	■■■□□ 2.83
PALM-208	ENST00000592155	CEP162	Q5TB80	1403 aa		32.69	■■■□□ 2.82
PALM-208	ENST00000592155	RUSC2	Q8N2Y8	1516 aa		32.68	■■■□□ 2.82
PALM-208	ENST00000592155	SYNJ1	O43426	1573 aa		32.58	■■■□□ 2.81
PALM-208	ENST00000592155	GOLGA3	Q08378	1498 aa		32.56	■■■□□ 2.8
PALM-208	ENST00000592155	UBTF	P17480	764 aa	Known RBP	32.52	■■■□□ 2.8
PALM-208	ENST00000592155	CEP164	Q9UPV0	1460 aa		32.42	■■■□□ 2.78
PALM-208	ENST00000592155	KIF21B	O75037	1637 aa		32.41	■■■□□ 2.78
PALM-208	ENST00000592155	HMGXB3	Q12766	1538 aa		32.32	■■■□□ 2.76
PALM-208	ENST00000592155	NCAPD3	P42695	1498 aa		32.3	■■■□□ 2.76
PALM-208	ENST00000592155	TOP2B	Q02880	1626 aa		32.28	■■■□□ 2.76
PALM-208	ENST00000592155	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.25	■■■□□ 2.75
PALM-208	ENST00000592155	CCER1	Q8TC90	406 aa	Predicted RBP	32.22	■■■□□ 2.75
PALM-208	ENST00000592155	BIVM-ERCC5	R4GMW8	1640 aa		32.19	■■■□□ 2.74
PALM-208	ENST00000592155	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.18	■■■□□ 2.74
PALM-208	ENST00000592155	CLIP1	P30622	1438 aa		32.14	■■■□□ 2.74
PALM-208	ENST00000592155	RAPGEF2	Q9Y4G8	1499 aa		32.11	■■■□□ 2.73
PALM-208	ENST00000592155	VPS8	Q8N3P4	1428 aa		32.02	■■■□□ 2.72
PALM-208	ENST00000592155	CFTR	P13569	1480 aa		31.97	■■■□□ 2.71
PALM-208	ENST00000592155	ERICH3	Q5RHP9	1530 aa		31.94	■■■□□ 2.7
PALM-208	ENST00000592155	CUX1	P39880	1505 aa		31.94	■■■□□ 2.7
PALM-208	ENST00000592155	PRX	Q9BXM0	1461 aa		31.9	■■■□□ 2.7
PALM-208	ENST00000592155	MYT1	Q01538	1121 aa		31.84	■■■□□ 2.69
PALM-208	ENST00000592155	APLP2	Q06481	763 aa		31.83	■■■□□ 2.69
PALM-208	ENST00000592155	PRDM2	Q13029	1718 aa		31.81	■■■□□ 2.68
PALM-208	ENST00000592155	KIF27	Q86VH2	1401 aa		31.8	■■■□□ 2.68
PALM-208	ENST00000592155	RANGAP1	P46060	587 aa	Predicted RBP	31.72	■■■□□ 2.67
PALM-208	ENST00000592155	ARAP1	Q96P48	1450 aa		31.63	■■■□□ 2.65
PALM-208	ENST00000592155	CADPS	Q9ULU8	1353 aa		31.62	■■■□□ 2.65
PALM-208	ENST00000592155	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.62	■■■□□ 2.65
PALM-208	ENST00000592155	DIEXF	Q68CQ4	756 aa	Known RBP	31.5	■■■□□ 2.63
PALM-208	ENST00000592155	CC2D2A	Q9P2K1	1620 aa		31.49	■■■□□ 2.63
PALM-208	ENST00000592155	CUX2	O14529	1486 aa		31.46	■■■□□ 2.63
PALM-208	ENST00000592155	IGF1R	P08069	1367 aa		31.43	■■■□□ 2.62
PALM-208	ENST00000592155	ARHGAP35	Q9NRY4	1499 aa		31.4	■■■□□ 2.62
PALM-208	ENST00000592155	FGD5	Q6ZNL6	1462 aa		31.4	■■■□□ 2.62
PALM-208	ENST00000592155	ZNF316	A6NFI3	1004 aa	Predicted RBP	31.36	■■■□□ 2.61
PALM-208	ENST00000592155	KANK4	Q5T7N3	995 aa	Predicted RBP	31.35	■■■□□ 2.61
PALM-208	ENST00000592155	CARMIL1	Q5VZK9	1371 aa		31.3	■■■□□ 2.6
PALM-208	ENST00000592155	FANCD2	Q9BXW9	1451 aa		31.29	■■■□□ 2.6
PALM-208	ENST00000592155	RRBP1	Q9P2E9	1410 aa	Known RBP	31.27	■■■□□ 2.6
PALM-208	ENST00000592155	SCAF1	Q9H7N4	1312 aa	Known RBP	31.24	■■■□□ 2.59
PALM-208	ENST00000592155	CLSPN	Q9HAW4	1339 aa		31.2	■■■□□ 2.59
PALM-208	ENST00000592155	DNMBP	Q6XZF7	1577 aa		31.18	■■■□□ 2.58
PALM-208	ENST00000592155	MAP3K1	Q13233	1512 aa		31.14	■■■□□ 2.57
PALM-208	ENST00000592155	ACIN1	Q9UKV3	1341 aa	Known RBP	31.12	■■■□□ 2.57
PALM-208	ENST00000592155	DHX57	Q6P158	1386 aa	Known RBP	31.11	■■■□□ 2.57
PALM-208	ENST00000592155	CCNB3	Q8WWL7	1395 aa		31.1	■■■□□ 2.57
PALM-208	ENST00000592155	ABCA10	Q8WWZ4	1543 aa		31.09	■■■□□ 2.57
PALM-208	ENST00000592155	TOPBP1	Q92547	1522 aa		31.08	■■■□□ 2.57
PALM-208	ENST00000592155	TIAM1	Q13009	1591 aa		31.07	■■■□□ 2.56
PALM-208	ENST00000592155	POLA1	P09884	1462 aa	Predicted RBP	31.05	■■■□□ 2.56
PALM-208	ENST00000592155	CENPB	P07199	599 aa	Predicted RBP	31.05	■■■□□ 2.56
PALM-208	ENST00000592155	RAD54L2	Q9Y4B4	1467 aa		31.03	■■■□□ 2.56
PALM-208	ENST00000592155	NEUROD1	Q13562	356 aa		31.03	■■■□□ 2.56
PALM-208	ENST00000592155	NES	P48681	1621 aa		31.02	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms