Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDC42SE1Q9NRR8 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDC42SE1Q9NRR8 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDC42SE1Q9NRR8 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDC42SE1Q9NRR8 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDC42SE1Q9NRR8 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDC42SE1Q9NRR8 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CDC42SE1Q9NRR8 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC14.03□□□□□ -0.16
CDC42SE1Q9NRR8 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDC42SE1Q9NRR8 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDC42SE1Q9NRR8 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDC42SE1Q9NRR8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDC42SE1Q9NRR8 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDC42SE1Q9NRR8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDC42SE1Q9NRR8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDC42SE1Q9NRR8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC14.02□□□□□ -0.16
CDC42SE1Q9NRR8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CDC42SE1Q9NRR8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDC42SE1Q9NRR8 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDC42SE1Q9NRR8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDC42SE1Q9NRR8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDC42SE1Q9NRR8 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
CDC42SE1Q9NRR8 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDC42SE1Q9NRR8 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC13.99□□□□□ -0.17
CDC42SE1Q9NRR8 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDC42SE1Q9NRR8 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDC42SE1Q9NRR8 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDC42SE1Q9NRR8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDC42SE1Q9NRR8 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC13.98□□□□□ -0.17
CDC42SE1Q9NRR8 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDC42SE1Q9NRR8 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
CDC42SE1Q9NRR8 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDC42SE1Q9NRR8 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDC42SE1Q9NRR8 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC13.97□□□□□ -0.17
CDC42SE1Q9NRR8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDC42SE1Q9NRR8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
CDC42SE1Q9NRR8 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDC42SE1Q9NRR8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
CDC42SE1Q9NRR8 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 RARA-203ENST00000394086 2008 ntTSL 2 BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CDC42SE1Q9NRR8 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
CDC42SE1Q9NRR8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDC42SE1Q9NRR8 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
CDC42SE1Q9NRR8 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDC42SE1Q9NRR8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC13.94□□□□□ -0.18
CDC42SE1Q9NRR8 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDC42SE1Q9NRR8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDC42SE1Q9NRR8 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDC42SE1Q9NRR8 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDC42SE1Q9NRR8 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDC42SE1Q9NRR8 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDC42SE1Q9NRR8 AL356512.1-201ENST00000607453 1739 ntBASIC13.9□□□□□ -0.18
CDC42SE1Q9NRR8 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDC42SE1Q9NRR8 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDC42SE1Q9NRR8 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDC42SE1Q9NRR8 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDC42SE1Q9NRR8 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDC42SE1Q9NRR8 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDC42SE1Q9NRR8 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDC42SE1Q9NRR8 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDC42SE1Q9NRR8 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CDC42SE1Q9NRR8 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDC42SE1Q9NRR8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDC42SE1Q9NRR8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDC42SE1Q9NRR8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC13.87□□□□□ -0.19
CDC42SE1Q9NRR8 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
CDC42SE1Q9NRR8 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDC42SE1Q9NRR8 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
CDC42SE1Q9NRR8 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDC42SE1Q9NRR8 AC142086.6-201ENST00000621154 1765 ntBASIC13.86□□□□□ -0.19
CDC42SE1Q9NRR8 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDC42SE1Q9NRR8 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDC42SE1Q9NRR8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDC42SE1Q9NRR8 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDC42SE1Q9NRR8 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDC42SE1Q9NRR8 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CDC42SE1Q9NRR8 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDC42SE1Q9NRR8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDC42SE1Q9NRR8 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDC42SE1Q9NRR8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CDC42SE1Q9NRR8 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CDC42SE1Q9NRR8 AL121749.1-202ENST00000609313 2153 ntBASIC13.83□□□□□ -0.2
CDC42SE1Q9NRR8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDC42SE1Q9NRR8 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC13.82□□□□□ -0.2
CDC42SE1Q9NRR8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDC42SE1Q9NRR8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms