RNA–Protein interactions for RNA: ENST00000394089.6

RARA-204, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RARA, Length 2,024 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-204ENST00000394089 NISCHQ9Y2I1 1504 aa51.68■■■■■ 5.86
RARA-204ENST00000394089 CCDC180Q9P1Z9 1646 aa44.98■■■■■ 4.79
RARA-204ENST00000394089 ZCCHC6Q5VYS8 1495 aaKnown RBP43.45■■■■■ 4.55
RARA-204ENST00000394089 DCAF1Q9Y4B6 1507 aa42.77■■■■■ 4.44
RARA-204ENST00000394089 DCAF8L2P0C7V8 631 aa42.53■■■■■ 4.4
RARA-204ENST00000394089 ABCC9O60706 1549 aa42.31■■■■■ 4.36
RARA-204ENST00000394089 MYO15BQ96JP2 1530 aa42.2■■■■■ 4.35
RARA-204ENST00000394089 SHROOM4Q9ULL8 1493 aa42.2■■■■■ 4.35
RARA-204ENST00000394089 NACADO15069 1562 aa41.86■■■■■ 4.29
RARA-204ENST00000394089 RB1CC1Q8TDY2 1594 aa41.43■■■■■ 4.22
RARA-204ENST00000394089 SCRIBQ14160 1630 aa41.34■■■■■ 4.21
RARA-204ENST00000394089 SUPT5HO00267 1087 aaKnown RBP40.71■■■■■ 4.11
RARA-204ENST00000394089 UNC13AQ9UPW8 1703 aa40.56■■■■■ 4.08
RARA-204ENST00000394089 BICRAQ9NZM4 1560 aa40.18■■■■■ 4.02
RARA-204ENST00000394089 RSF1Q96T23 1441 aaPredicted RBP40.16■■■■■ 4.02
RARA-204ENST00000394089 CECR2Q9BXF3 1484 aa40.11■■■■■ 4.01
RARA-204ENST00000394089 PABPN1Q86U42 306 aaKnown RBP eCLIP39.93■■■■□ 3.98
RARA-204ENST00000394089 MROH2BQ7Z745 1585 aa39.91■■■■□ 3.98
RARA-204ENST00000394089 BAZ1AQ9NRL2 1556 aaPredicted RBP39.88■■■■□ 3.98
RARA-204ENST00000394089 SMARCA4P51532 1647 aa39.67■■■■□ 3.94
RARA-204ENST00000394089 WIZO95785 1651 aa39.58■■■■□ 3.93
RARA-204ENST00000394089 PEG3Q9GZU2 1588 aa39.22■■■■□ 3.87
RARA-204ENST00000394089 TOP2AP11388 1531 aaKnown RBP39.21■■■■□ 3.87
RARA-204ENST00000394089 CHIC1Q5VXU3 224 aa39.13■■■■□ 3.85
RARA-204ENST00000394089 ATAD2BQ9ULI0 1458 aa38.99■■■■□ 3.83
RARA-204ENST00000394089 SMARCA2P51531 1590 aa38.97■■■■□ 3.83
RARA-204ENST00000394089 EIF4G1Q04637 1599 aaKnown RBP38.95■■■■□ 3.83
RARA-204ENST00000394089 CCDC88BA6NC98 1476 aa38.81■■■■□ 3.8
RARA-204ENST00000394089 BAZ1BQ9UIG0 1483 aaKnown RBP38.76■■■■□ 3.8
RARA-204ENST00000394089 NCAPD3P42695 1498 aa38.64■■■■□ 3.78
RARA-204ENST00000394089 HMGXB3Q12766 1538 aa38.59■■■■□ 3.77
RARA-204ENST00000394089 CC2D2AQ9P2K1 1620 aa38.31■■■■□ 3.72
RARA-204ENST00000394089 TRIM41Q8WV44 630 aa38.3■■■■□ 3.72
RARA-204ENST00000394089 ABCC8Q09428 1581 aa38.01■■■■□ 3.68
RARA-204ENST00000394089 CFTRP13569 1480 aa37.83■■■■□ 3.65
RARA-204ENST00000394089 WRNQ14191 1432 aaPredicted RBP eCLIP37.78■■■■□ 3.64
RARA-204ENST00000394089 CADPSQ9ULU8 1353 aa37.65■■■■□ 3.62
RARA-204ENST00000394089 HRCP23327 699 aa37.62■■■■□ 3.61
RARA-204ENST00000394089 SYNJ1O43426 1573 aa37.61■■■■□ 3.61
RARA-204ENST00000394089 PRDM2Q13029 1718 aa37.61■■■■□ 3.61
RARA-204ENST00000394089 LOC105371045A0A1W2PR82 267 aa37.6■■■■□ 3.61
RARA-204ENST00000394089 FAM9AQ8IZU1 332 aaPredicted RBP37.55■■■■□ 3.6
RARA-204ENST00000394089 TOP2BQ02880 1626 aa37.46■■■■□ 3.59
RARA-204ENST00000394089 BIVM-ERCC5R4GMW8 1640 aa37.42■■■■□ 3.58
RARA-204ENST00000394089 EEA1Q15075 1411 aa37.38■■■■□ 3.57
RARA-204ENST00000394089 SOGA1O94964 1423 aa37.36■■■■□ 3.57
RARA-204ENST00000394089 CUX1P39880 1505 aa37.31■■■■□ 3.56
RARA-204ENST00000394089 LAMC3Q9Y6N6 1575 aa37.27■■■■□ 3.56
RARA-204ENST00000394089 DNAJC5BQ9UF47 199 aa37.26■■■■□ 3.55
RARA-204ENST00000394089 FANCD2Q9BXW9 1451 aa37.22■■■■□ 3.55
RARA-204ENST00000394089 NESP48681 1621 aa37.21■■■■□ 3.55
RARA-204ENST00000394089 RUSC2Q8N2Y8 1516 aa37.2■■■■□ 3.55
RARA-204ENST00000394089 CSRNP3Q8WYN3 585 aa37.13■■■■□ 3.53
RARA-204ENST00000394089 PDS5BQ9NTI5 1447 aa36.98■■■■□ 3.51
RARA-204ENST00000394089 EHMT2Q96KQ7 1210 aa36.97■■■■□ 3.51
RARA-204ENST00000394089 CEP164Q9UPV0 1460 aa36.96■■■■□ 3.51
RARA-204ENST00000394089 DNMBPQ6XZF7 1577 aa36.93■■■■□ 3.5
RARA-204ENST00000394089 FGD5Q6ZNL6 1462 aa36.87■■■■□ 3.49
RARA-204ENST00000394089 KIF21BO75037 1637 aa36.86■■■■□ 3.49
RARA-204ENST00000394089 GOLGA3Q08378 1498 aa36.85■■■■□ 3.49
RARA-204ENST00000394089 TOPBP1Q92547 1522 aa36.84■■■■□ 3.49
RARA-204ENST00000394089 KIF27Q86VH2 1401 aa36.82■■■■□ 3.48
RARA-204ENST00000394089 TNIKQ9UKE5 1360 aa36.78■■■■□ 3.48
RARA-204ENST00000394089 KIF21AQ7Z4S6 1674 aa36.76■■■■□ 3.47
RARA-204ENST00000394089 URB2Q14146 1524 aaKnown RBP36.74■■■■□ 3.47
RARA-204ENST00000394089 POLA1P09884 1462 aaPredicted RBP36.67■■■■□ 3.46
RARA-204ENST00000394089 CUX2O14529 1486 aa36.67■■■■□ 3.46
RARA-204ENST00000394089 PRXQ9BXM0 1461 aa36.64■■■■□ 3.46
RARA-204ENST00000394089 UBTFP17480 764 aaKnown RBP36.63■■■■□ 3.45
RARA-204ENST00000394089 ERICH3Q5RHP9 1530 aa36.59■■■■□ 3.45
RARA-204ENST00000394089 RAPGEF2Q9Y4G8 1499 aa36.59■■■■□ 3.45
RARA-204ENST00000394089 ABCA10Q8WWZ4 1543 aa36.58■■■■□ 3.45
RARA-204ENST00000394089 CEP162Q5TB80 1403 aa36.57■■■■□ 3.44
RARA-204ENST00000394089 RAD54L2Q9Y4B4 1467 aa36.54■■■■□ 3.44
RARA-204ENST00000394089 MRC2Q9UBG0 1479 aa36.49■■■■□ 3.43
RARA-204ENST00000394089 IGF1RP08069 1367 aa36.48■■■■□ 3.43
RARA-204ENST00000394089 PCGF6Q9BYE7 350 aa36.47■■■■□ 3.43
RARA-204ENST00000394089 PELP1Q8IZL8 1130 aaKnown RBP36.47■■■■□ 3.43
RARA-204ENST00000394089 WDR97A6NE52 1622 aa36.42■■■■□ 3.42
RARA-204ENST00000394089 PPARGC1BQ86YN6 1023 aaKnown RBP36.31■■■■□ 3.4
RARA-204ENST00000394089 WDR62O43379 1518 aa36.3■■■■□ 3.4
RARA-204ENST00000394089 CARMIL1Q5VZK9 1371 aa36.29■■■■□ 3.4
RARA-204ENST00000394089 TARBP1Q13395 1621 aaKnown RBP36.28■■■■□ 3.4
RARA-204ENST00000394089 ERCC6Q03468 1493 aa36.26■■■■□ 3.39
RARA-204ENST00000394089 ABCA5Q8WWZ7 1642 aa36.25■■■■□ 3.39
RARA-204ENST00000394089 CLIP1P30622 1438 aa36.25■■■■□ 3.39
RARA-204ENST00000394089 CUL7Q14999 1698 aa36.18■■■■□ 3.38
RARA-204ENST00000394089 TDRD9Q8NDG6 1382 aaKnown RBP36.16■■■■□ 3.38
RARA-204ENST00000394089 GAPVD1Q14C86 1478 aa36.15■■■■□ 3.38
RARA-204ENST00000394089 THOC2Q8NI27 1593 aaKnown RBP36.13■■■■□ 3.37
RARA-204ENST00000394089 IFT140Q96RY7 1462 aa36.09■■■■□ 3.37
RARA-204ENST00000394089 TRIM26Q12899 539 aaPredicted RBP36.07■■■■□ 3.36
RARA-204ENST00000394089 VPS8Q8N3P4 1428 aa35.97■■■■□ 3.35
RARA-204ENST00000394089 PBRM1Q86U86 1689 aa35.92■■■■□ 3.34
RARA-204ENST00000394089 RANGAP1P46060 587 aaPredicted RBP35.91■■■■□ 3.34
RARA-204ENST00000394089 AQRO60306 1485 aaKnown RBP eCLIP35.9■■■■□ 3.344e-7■■■■□ 24.2
RARA-204ENST00000394089 ARAP1Q96P48 1450 aa35.88■■■■□ 3.33
RARA-204ENST00000394089 GRIN2BQ13224 1484 aa35.86■■■■□ 3.33
RARA-204ENST00000394089 ZNF608Q9ULD9 1512 aaPredicted RBP35.85■■■■□ 3.33
RARA-204ENST00000394089 ARHGAP35Q9NRY4 1499 aa35.84■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms