Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MACF1-219ENST00000484793 834 ntTSL 2 BASIC8.13□□□□□ -1.11
SYNE1Q8NF91 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC8.13□□□□□ -1.11
SYNE1Q8NF91 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 HSD17B1P1-201ENST00000590052 955 ntBASIC8.12□□□□□ -1.11
SYNE1Q8NF91 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SYNE1Q8NF91 MIR639-201ENST00000384974 98 ntBASIC8.11□□□□□ -1.11
SYNE1Q8NF91 MIR6090-201ENST00000622481 60 ntBASIC8.11□□□□□ -1.11
SYNE1Q8NF91 RPS2-209ENST00000529806 993 ntTSL 3 BASIC8.11□□□□□ -1.11
SYNE1Q8NF91 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC8.11□□□□□ -1.11
SYNE1Q8NF91 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
SYNE1Q8NF91 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 CR559946.2-201ENST00000623684 991 ntBASIC8.1□□□□□ -1.11
SYNE1Q8NF91 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 BOD1-206ENST00000480951 814 ntTSL 2 BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
SYNE1Q8NF91 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 DUX4L11-201ENST00000611504 1267 ntBASIC8.09□□□□□ -1.11
SYNE1Q8NF91 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 DUX4L12-201ENST00000614593 1267 ntBASIC8.09□□□□□ -1.11
SYNE1Q8NF91 DUX4L14-201ENST00000621227 1267 ntBASIC8.09□□□□□ -1.11
SYNE1Q8NF91 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SYNE1Q8NF91 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
SYNE1Q8NF91 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
SYNE1Q8NF91 MIR4449-201ENST00000578365 66 ntBASIC8.08□□□□□ -1.12
SYNE1Q8NF91 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SYNE1Q8NF91 MIR3648-2-201ENST00000581792 180 ntBASIC8.07□□□□□ -1.12
SYNE1Q8NF91 MIR3648-1-201ENST00000615959 180 ntBASIC8.07□□□□□ -1.12
SYNE1Q8NF91 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
SYNE1Q8NF91 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SYNE1Q8NF91 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
SYNE1Q8NF91 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
SYNE1Q8NF91 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 AGPS-202ENST00000409888 815 ntTSL 4 BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 CIB2-204ENST00000557846 934 ntTSL 3 BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 CALM3-209ENST00000597743 577 ntTSL 4 BASIC8.06□□□□□ -1.12
SYNE1Q8NF91 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
SYNE1Q8NF91 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
SYNE1Q8NF91 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
SYNE1Q8NF91 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
SYNE1Q8NF91 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
SYNE1Q8NF91 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC8.05□□□□□ -1.12
SYNE1Q8NF91 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC8.04□□□□□ -1.12
SYNE1Q8NF91 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SYNE1Q8NF91 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SYNE1Q8NF91 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC8.04□□□□□ -1.12
SYNE1Q8NF91 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SYNE1Q8NF91 DUX4L29-201ENST00000425409 679 ntBASIC8.04□□□□□ -1.12
SYNE1Q8NF91 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC8.04□□□□□ -1.12
SYNE1Q8NF91 METRNL-202ENST00000570778 967 ntTSL 5 BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 GDI1-215ENST00000630693 786 ntTSL 4 BASIC8.03□□□□□ -1.12
SYNE1Q8NF91 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.12
SYNE1Q8NF91 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC8.02□□□□□ -1.12
SYNE1Q8NF91 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.12
SYNE1Q8NF91 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 ABHD17AP3-201ENST00000503096 1137 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms