Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC108673.1-201ENST00000510422 1159 ntBASIC32.79■■■□□ 2.84
SMC1BQ8NDV3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC32.79■■■□□ 2.84
SMC1BQ8NDV3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32.76■■■□□ 2.83
SMC1BQ8NDV3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
SMC1BQ8NDV3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
SMC1BQ8NDV3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.74■■■□□ 2.83
SMC1BQ8NDV3 MIR6090-201ENST00000622481 60 ntBASIC32.74■■■□□ 2.83
SMC1BQ8NDV3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SMC1BQ8NDV3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SMC1BQ8NDV3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SMC1BQ8NDV3 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.72■■■□□ 2.83
SMC1BQ8NDV3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC32.71■■■□□ 2.83
SMC1BQ8NDV3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC32.7■■■□□ 2.83
SMC1BQ8NDV3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
SMC1BQ8NDV3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.68■■■□□ 2.82
SMC1BQ8NDV3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
SMC1BQ8NDV3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.66■■■□□ 2.82
SMC1BQ8NDV3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SMC1BQ8NDV3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
SMC1BQ8NDV3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SMC1BQ8NDV3 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SMC1BQ8NDV3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC32.63■■■□□ 2.81
SMC1BQ8NDV3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SMC1BQ8NDV3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.6■■■□□ 2.81
SMC1BQ8NDV3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC32.6■■■□□ 2.81
SMC1BQ8NDV3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SMC1BQ8NDV3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.59■■■□□ 2.81
SMC1BQ8NDV3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC32.59■■■□□ 2.81
SMC1BQ8NDV3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
SMC1BQ8NDV3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC32.58■■■□□ 2.81
SMC1BQ8NDV3 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SMC1BQ8NDV3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC32.57■■■□□ 2.8
SMC1BQ8NDV3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.56■■■□□ 2.8
SMC1BQ8NDV3 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.54■■■□□ 2.8
SMC1BQ8NDV3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.54■■■□□ 2.8
SMC1BQ8NDV3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC32.54■■■□□ 2.8
SMC1BQ8NDV3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.53■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
SMC1BQ8NDV3 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L13-201ENST00000554103 1267 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L15-201ENST00000611059 1267 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L23-201ENST00000615195 1269 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L24-201ENST00000617576 1269 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L22-201ENST00000618238 1269 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L20-201ENST00000619712 1269 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L21-201ENST00000622058 1269 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L10-201ENST00000622460 1267 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 DUX4L25-201ENST00000624915 1269 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 RNF126P1-201ENST00000567452 1320 ntBASIC32.51■■■□□ 2.79
SMC1BQ8NDV3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.5■■■□□ 2.79
SMC1BQ8NDV3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
SMC1BQ8NDV3 AC012354.3-201ENST00000623734 483 ntBASIC32.5■■■□□ 2.79
SMC1BQ8NDV3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
SMC1BQ8NDV3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SMC1BQ8NDV3 GPX1-201ENST00000419349 1106 ntBASIC32.49■■■□□ 2.79
SMC1BQ8NDV3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
SMC1BQ8NDV3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
SMC1BQ8NDV3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
SMC1BQ8NDV3 HES6-205ENST00000409356 528 ntTSL 2 BASIC32.46■■■□□ 2.79
SMC1BQ8NDV3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.45■■■□□ 2.79
SMC1BQ8NDV3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC32.44■■■□□ 2.78
SMC1BQ8NDV3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SMC1BQ8NDV3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
SMC1BQ8NDV3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SMC1BQ8NDV3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SMC1BQ8NDV3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SMC1BQ8NDV3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
SMC1BQ8NDV3 NTF6A-201ENST00000591175 560 ntBASIC32.41■■■□□ 2.78
SMC1BQ8NDV3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
SMC1BQ8NDV3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
SMC1BQ8NDV3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SMC1BQ8NDV3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SMC1BQ8NDV3 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SMC1BQ8NDV3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SMC1BQ8NDV3 AC018358.1-201ENST00000631079 1402 ntBASIC32.33■■■□□ 2.77
SMC1BQ8NDV3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
SMC1BQ8NDV3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC32.32■■■□□ 2.76
SMC1BQ8NDV3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.32■■■□□ 2.76
SMC1BQ8NDV3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SMC1BQ8NDV3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SMC1BQ8NDV3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.3■■■□□ 2.76
SMC1BQ8NDV3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC32.29■■■□□ 2.76
SMC1BQ8NDV3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC32.29■■■□□ 2.76
SMC1BQ8NDV3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
SMC1BQ8NDV3 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
SMC1BQ8NDV3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
SMC1BQ8NDV3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.28■■■□□ 2.76
SMC1BQ8NDV3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
SMC1BQ8NDV3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms