Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AC016575.1-201ENST00000607026 382 ntBASIC34.6■■■■□ 3.13
RC3H1Q5TC82 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC34.59■■■■□ 3.13
RC3H1Q5TC82 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC34.59■■■■□ 3.13
RC3H1Q5TC82 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
RC3H1Q5TC82 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
RC3H1Q5TC82 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC34.58■■■■□ 3.13
RC3H1Q5TC82 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC34.57■■■■□ 3.12
RC3H1Q5TC82 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC34.57■■■■□ 3.12
RC3H1Q5TC82 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC34.57■■■■□ 3.12
RC3H1Q5TC82 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC34.56■■■■□ 3.12
RC3H1Q5TC82 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
RC3H1Q5TC82 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
RC3H1Q5TC82 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.54■■■■□ 3.12
RC3H1Q5TC82 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC34.53■■■■□ 3.12
RC3H1Q5TC82 LINC01971-201ENST00000617888 1048 ntBASIC34.53■■■■□ 3.12
RC3H1Q5TC82 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC34.53■■■■□ 3.12
RC3H1Q5TC82 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC34.52■■■■□ 3.12
RC3H1Q5TC82 AGPS-202ENST00000409888 815 ntTSL 4 BASIC34.52■■■■□ 3.12
RC3H1Q5TC82 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC34.52■■■■□ 3.12
RC3H1Q5TC82 DUX4L11-201ENST00000611504 1267 ntBASIC34.52■■■■□ 3.12
RC3H1Q5TC82 DUX4L12-201ENST00000614593 1267 ntBASIC34.52■■■■□ 3.12
RC3H1Q5TC82 DUX4L14-201ENST00000621227 1267 ntBASIC34.52■■■■□ 3.12
RC3H1Q5TC82 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
RC3H1Q5TC82 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
RC3H1Q5TC82 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
RC3H1Q5TC82 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
RC3H1Q5TC82 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC34.48■■■■□ 3.11
RC3H1Q5TC82 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC34.48■■■■□ 3.11
RC3H1Q5TC82 CR559946.2-201ENST00000623684 991 ntBASIC34.47■■■■□ 3.11
RC3H1Q5TC82 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RC3H1Q5TC82 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC34.46■■■■□ 3.11
RC3H1Q5TC82 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC34.46■■■■□ 3.11
RC3H1Q5TC82 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC34.46■■■■□ 3.11
RC3H1Q5TC82 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RC3H1Q5TC82 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.45■■■■□ 3.11
RC3H1Q5TC82 HSD17B1P1-201ENST00000590052 955 ntBASIC34.45■■■■□ 3.11
RC3H1Q5TC82 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
RC3H1Q5TC82 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC34.44■■■■□ 3.1
RC3H1Q5TC82 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC34.44■■■■□ 3.1
RC3H1Q5TC82 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
RC3H1Q5TC82 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
RC3H1Q5TC82 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
RC3H1Q5TC82 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
RC3H1Q5TC82 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
RC3H1Q5TC82 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
RC3H1Q5TC82 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC34.39■■■■□ 3.1
RC3H1Q5TC82 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
RC3H1Q5TC82 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
RC3H1Q5TC82 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC34.36■■■■□ 3.09
RC3H1Q5TC82 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
RC3H1Q5TC82 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC34.34■■■■□ 3.09
RC3H1Q5TC82 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
RC3H1Q5TC82 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
RC3H1Q5TC82 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC34.31■■■■□ 3.08
RC3H1Q5TC82 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC34.31■■■■□ 3.08
RC3H1Q5TC82 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC34.3■■■■□ 3.08
RC3H1Q5TC82 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC34.3■■■■□ 3.08
RC3H1Q5TC82 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC34.29■■■■□ 3.08
RC3H1Q5TC82 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
RC3H1Q5TC82 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
RC3H1Q5TC82 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.28■■■■□ 3.08
RC3H1Q5TC82 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
RC3H1Q5TC82 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
RC3H1Q5TC82 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC34.25■■■■□ 3.07
RC3H1Q5TC82 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
RC3H1Q5TC82 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC34.24■■■■□ 3.07
RC3H1Q5TC82 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC34.24■■■■□ 3.07
RC3H1Q5TC82 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
RC3H1Q5TC82 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
RC3H1Q5TC82 ABHD17AP3-201ENST00000503096 1137 ntBASIC34.22■■■■□ 3.07
RC3H1Q5TC82 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
RC3H1Q5TC82 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC34.2■■■■□ 3.07
RC3H1Q5TC82 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC34.2■■■■□ 3.07
RC3H1Q5TC82 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
RC3H1Q5TC82 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC34.19■■■■□ 3.06
RC3H1Q5TC82 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC34.18■■■■□ 3.06
RC3H1Q5TC82 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC34.18■■■■□ 3.06
RC3H1Q5TC82 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC34.18■■■■□ 3.06
RC3H1Q5TC82 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L13-201ENST00000554103 1267 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L15-201ENST00000611059 1267 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L23-201ENST00000615195 1269 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L24-201ENST00000617576 1269 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L22-201ENST00000618238 1269 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L20-201ENST00000619712 1269 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L21-201ENST00000622058 1269 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L10-201ENST00000622460 1267 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 DUX4L25-201ENST00000624915 1269 ntBASIC34.16■■■■□ 3.06
RC3H1Q5TC82 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC34.15■■■■□ 3.06
RC3H1Q5TC82 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
RC3H1Q5TC82 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC34.13■■■■□ 3.05
RC3H1Q5TC82 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC34.12■■■■□ 3.05
RC3H1Q5TC82 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC34.12■■■■□ 3.05
RC3H1Q5TC82 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC34.11■■■■□ 3.05
RC3H1Q5TC82 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC34.1■■■■□ 3.05
RC3H1Q5TC82 METRNL-202ENST00000570778 967 ntTSL 5 BASIC34.1■■■■□ 3.05
RC3H1Q5TC82 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
RC3H1Q5TC82 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
RC3H1Q5TC82 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC34.09■■■■□ 3.05
RC3H1Q5TC82 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms