Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PRKDCP78527 ILK-212ENST00000532063 1617 ntTSL 2 BASIC20.15■□□□□ 0.82
PRKDCP78527 MIR6090-201ENST00000622481 60 ntBASIC20.14■□□□□ 0.81
PRKDCP78527 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PRKDCP78527 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PRKDCP78527 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.13■□□□□ 0.81
PRKDCP78527 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PRKDCP78527 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PRKDCP78527 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PRKDCP78527 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.12■□□□□ 0.81
PRKDCP78527 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L13-201ENST00000554103 1267 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L15-201ENST00000611059 1267 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L23-201ENST00000615195 1269 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L24-201ENST00000617576 1269 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L22-201ENST00000618238 1269 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L20-201ENST00000619712 1269 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L21-201ENST00000622058 1269 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L10-201ENST00000622460 1267 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 DUX4L25-201ENST00000624915 1269 ntBASIC20.11■□□□□ 0.81
PRKDCP78527 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PRKDCP78527 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PRKDCP78527 RNF126P1-201ENST00000567452 1320 ntBASIC20.1■□□□□ 0.81
PRKDCP78527 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PRKDCP78527 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PRKDCP78527 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.09■□□□□ 0.81
PRKDCP78527 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.08■□□□□ 0.81
PRKDCP78527 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
PRKDCP78527 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PRKDCP78527 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.08■□□□□ 0.8
PRKDCP78527 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.07■□□□□ 0.8
PRKDCP78527 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PRKDCP78527 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PRKDCP78527 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PRKDCP78527 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.04■□□□□ 0.8
PRKDCP78527 WASH5P-204ENST00000632292 975 ntBASIC20.04■□□□□ 0.8
PRKDCP78527 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PRKDCP78527 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PRKDCP78527 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.03■□□□□ 0.8
PRKDCP78527 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PRKDCP78527 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PRKDCP78527 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.02■□□□□ 0.8
PRKDCP78527 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20■□□□□ 0.79
PRKDCP78527 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PRKDCP78527 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PRKDCP78527 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PRKDCP78527 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
PRKDCP78527 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PRKDCP78527 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20■□□□□ 0.79
PRKDCP78527 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKDCP78527 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKDCP78527 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKDCP78527 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PRKDCP78527 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC19.98■□□□□ 0.79
PRKDCP78527 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.98■□□□□ 0.79
PRKDCP78527 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKDCP78527 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKDCP78527 NTF6A-201ENST00000591175 560 ntBASIC19.98■□□□□ 0.79
PRKDCP78527 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKDCP78527 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKDCP78527 AC018358.1-201ENST00000631079 1402 ntBASIC19.96■□□□□ 0.79
PRKDCP78527 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.95■□□□□ 0.79
PRKDCP78527 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PRKDCP78527 GPX1-201ENST00000419349 1106 ntBASIC19.95■□□□□ 0.78
PRKDCP78527 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.95■□□□□ 0.78
PRKDCP78527 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PRKDCP78527 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
PRKDCP78527 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 AL592295.1-201ENST00000400984 884 ntBASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PRKDCP78527 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PRKDCP78527 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PRKDCP78527 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC19.91■□□□□ 0.78
PRKDCP78527 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PRKDCP78527 AC019069.1-201ENST00000610008 1333 ntBASIC19.9■□□□□ 0.78
PRKDCP78527 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PRKDCP78527 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PRKDCP78527 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.89■□□□□ 0.78
PRKDCP78527 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
PRKDCP78527 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.88■□□□□ 0.77
PRKDCP78527 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC19.88■□□□□ 0.77
PRKDCP78527 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKDCP78527 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKDCP78527 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKDCP78527 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKDCP78527 AC012354.3-201ENST00000623734 483 ntBASIC19.87■□□□□ 0.77
PRKDCP78527 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PRKDCP78527 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKDCP78527 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.86■□□□□ 0.77
PRKDCP78527 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.86■□□□□ 0.77
PRKDCP78527 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PRKDCP78527 AC108673.1-201ENST00000510422 1159 ntBASIC19.85■□□□□ 0.77
PRKDCP78527 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.85■□□□□ 0.77
PRKDCP78527 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms