Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC28.93■■■□□ 2.22
SMIM28A0A1B0GU29 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SMIM28A0A1B0GU29 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SMIM28A0A1B0GU29 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.91■■■□□ 2.22
SMIM28A0A1B0GU29 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.91■■■□□ 2.22
SMIM28A0A1B0GU29 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.89■■■□□ 2.22
SMIM28A0A1B0GU29 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.89■■■□□ 2.21
SMIM28A0A1B0GU29 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.88■■■□□ 2.21
SMIM28A0A1B0GU29 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SMIM28A0A1B0GU29 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SMIM28A0A1B0GU29 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.85■■■□□ 2.21
SMIM28A0A1B0GU29 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
SMIM28A0A1B0GU29 AL161658.1-201ENST00000623641 1967 ntBASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
SMIM28A0A1B0GU29 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SMIM28A0A1B0GU29 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SMIM28A0A1B0GU29 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
SMIM28A0A1B0GU29 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
SMIM28A0A1B0GU29 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.81■■■□□ 2.2
SMIM28A0A1B0GU29 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SMIM28A0A1B0GU29 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SMIM28A0A1B0GU29 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SMIM28A0A1B0GU29 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SMIM28A0A1B0GU29 ABHD17AP4-201ENST00000411545 909 ntBASIC28.79■■■□□ 2.2
SMIM28A0A1B0GU29 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SMIM28A0A1B0GU29 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.78■■■□□ 2.2
SMIM28A0A1B0GU29 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.78■■■□□ 2.2
SMIM28A0A1B0GU29 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SMIM28A0A1B0GU29 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
SMIM28A0A1B0GU29 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SMIM28A0A1B0GU29 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
SMIM28A0A1B0GU29 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.77■■■□□ 2.2
SMIM28A0A1B0GU29 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
SMIM28A0A1B0GU29 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SMIM28A0A1B0GU29 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SMIM28A0A1B0GU29 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SMIM28A0A1B0GU29 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SMIM28A0A1B0GU29 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
SMIM28A0A1B0GU29 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
SMIM28A0A1B0GU29 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
SMIM28A0A1B0GU29 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
SMIM28A0A1B0GU29 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
SMIM28A0A1B0GU29 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC28.74■■■□□ 2.19
SMIM28A0A1B0GU29 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.74■■■□□ 2.19
SMIM28A0A1B0GU29 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SMIM28A0A1B0GU29 AC108673.1-201ENST00000510422 1159 ntBASIC28.73■■■□□ 2.19
SMIM28A0A1B0GU29 MIR6090-201ENST00000622481 60 ntBASIC28.73■■■□□ 2.19
SMIM28A0A1B0GU29 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SMIM28A0A1B0GU29 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.72■■■□□ 2.19
SMIM28A0A1B0GU29 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SMIM28A0A1B0GU29 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.72■■■□□ 2.19
SMIM28A0A1B0GU29 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC28.71■■■□□ 2.19
SMIM28A0A1B0GU29 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.71■■■□□ 2.19
SMIM28A0A1B0GU29 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.7■■■□□ 2.19
SMIM28A0A1B0GU29 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.7■■■□□ 2.18
SMIM28A0A1B0GU29 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SMIM28A0A1B0GU29 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.69■■■□□ 2.18
SMIM28A0A1B0GU29 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.69■■■□□ 2.18
SMIM28A0A1B0GU29 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SMIM28A0A1B0GU29 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SMIM28A0A1B0GU29 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMIM28A0A1B0GU29 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.66■■■□□ 2.18
SMIM28A0A1B0GU29 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SMIM28A0A1B0GU29 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SMIM28A0A1B0GU29 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.65■■■□□ 2.18
SMIM28A0A1B0GU29 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.65■■■□□ 2.18
SMIM28A0A1B0GU29 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
SMIM28A0A1B0GU29 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
SMIM28A0A1B0GU29 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
SMIM28A0A1B0GU29 DUX4L29-201ENST00000425409 679 ntBASIC28.64■■■□□ 2.18
SMIM28A0A1B0GU29 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
SMIM28A0A1B0GU29 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SMIM28A0A1B0GU29 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SMIM28A0A1B0GU29 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.63■■■□□ 2.17
SMIM28A0A1B0GU29 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.63■■■□□ 2.17
SMIM28A0A1B0GU29 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.62■■■□□ 2.17
SMIM28A0A1B0GU29 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SMIM28A0A1B0GU29 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SMIM28A0A1B0GU29 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
SMIM28A0A1B0GU29 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SMIM28A0A1B0GU29 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SMIM28A0A1B0GU29 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SMIM28A0A1B0GU29 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.61■■■□□ 2.17
SMIM28A0A1B0GU29 MIR7108-201ENST00000614319 87 ntBASIC28.61■■■□□ 2.17
SMIM28A0A1B0GU29 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMIM28A0A1B0GU29 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMIM28A0A1B0GU29 ZNRF2P2-203ENST00000454624 420 ntBASIC28.6■■■□□ 2.17
SMIM28A0A1B0GU29 AC021231.2-201ENST00000594613 730 ntBASIC28.6■■■□□ 2.17
SMIM28A0A1B0GU29 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMIM28A0A1B0GU29 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.58■■■□□ 2.17
SMIM28A0A1B0GU29 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SMIM28A0A1B0GU29 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
SMIM28A0A1B0GU29 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMIM28A0A1B0GU29 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMIM28A0A1B0GU29 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.57■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms