Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 AC020928.2-201ENST00000588717 2197 ntBASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 RBM17P2-201ENST00000616397 1405 ntBASIC32.58■■■□□ 2.81
COL17A1Q9UMD9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC32.57■■■□□ 2.8
COL17A1Q9UMD9 AL353803.4-201ENST00000565882 1934 ntBASIC32.57■■■□□ 2.8
COL17A1Q9UMD9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC32.57■■■□□ 2.8
COL17A1Q9UMD9 RN7SL850P-201ENST00000579959 291 ntBASIC32.57■■■□□ 2.8
COL17A1Q9UMD9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
COL17A1Q9UMD9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
COL17A1Q9UMD9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
COL17A1Q9UMD9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
COL17A1Q9UMD9 AL591742.1-201ENST00000604433 565 ntBASIC32.55■■■□□ 2.8
COL17A1Q9UMD9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
COL17A1Q9UMD9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
COL17A1Q9UMD9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
COL17A1Q9UMD9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
COL17A1Q9UMD9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 RPS2P55-201ENST00000397318 883 ntBASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 AC107956.1-201ENST00000494359 873 ntBASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 PNMA6B-201ENST00000538162 1200 ntBASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC32.54■■■□□ 2.8
COL17A1Q9UMD9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 AC022211.4-201ENST00000625094 2161 ntBASIC32.53■■■□□ 2.8
COL17A1Q9UMD9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
COL17A1Q9UMD9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC32.52■■■□□ 2.8
COL17A1Q9UMD9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
COL17A1Q9UMD9 LSM12P1-201ENST00000411836 588 ntBASIC32.52■■■□□ 2.8
COL17A1Q9UMD9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
COL17A1Q9UMD9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
COL17A1Q9UMD9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
COL17A1Q9UMD9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC32.51■■■□□ 2.8
COL17A1Q9UMD9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
COL17A1Q9UMD9 TMPOP1-202ENST00000424642 1267 ntBASIC32.51■■■□□ 2.79
COL17A1Q9UMD9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC32.51■■■□□ 2.79
COL17A1Q9UMD9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
COL17A1Q9UMD9 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
COL17A1Q9UMD9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
COL17A1Q9UMD9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 AL355472.2-201ENST00000422958 438 ntBASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC32.5■■■□□ 2.79
COL17A1Q9UMD9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 KRT17P3-201ENST00000420566 1262 ntBASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 SLC29A4P2-201ENST00000504749 1089 ntBASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL17A1Q9UMD9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC32.48■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms