RNA–Protein interactions for RNA: ENST00000362011.6

SHISA4-201, Transcript of shisa family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHISA4, Length 1,341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA4-201ENST00000362011 NISCHQ9Y2I1 1504 aa48.21■■■■■ 5.31
SHISA4-201ENST00000362011 ABCC9O60706 1549 aa43.07■■■■■ 4.49
SHISA4-201ENST00000362011 CCDC180Q9P1Z9 1646 aa42.9■■■■■ 4.46
SHISA4-201ENST00000362011 RB1CC1Q8TDY2 1594 aa40.94■■■■■ 4.14
SHISA4-201ENST00000362011 DNAJC5BQ9UF47 199 aa40.74■■■■■ 4.11
SHISA4-201ENST00000362011 NACADO15069 1562 aa40.64■■■■■ 4.1
SHISA4-201ENST00000362011 ZCCHC6Q5VYS8 1495 aaKnown RBP40.39■■■■■ 4.06
SHISA4-201ENST00000362011 DCAF8L2P0C7V8 631 aa40.14■■■■■ 4.02
SHISA4-201ENST00000362011 MYO15BQ96JP2 1530 aa40.09■■■■■ 4.01
SHISA4-201ENST00000362011 PABPN1Q86U42 306 aaKnown RBP eCLIP40.04■■■■■ 4
SHISA4-201ENST00000362011 UNC13AQ9UPW8 1703 aa39.99■■■■□ 3.99
SHISA4-201ENST00000362011 DCAF1Q9Y4B6 1507 aa39.94■■■■□ 3.98
SHISA4-201ENST00000362011 BICRAQ9NZM4 1560 aa39.82■■■■□ 3.97
SHISA4-201ENST00000362011 SHROOM4Q9ULL8 1493 aa39.3■■■■□ 3.88
SHISA4-201ENST00000362011 SCRIBQ14160 1630 aa38.96■■■■□ 3.83
SHISA4-201ENST00000362011 CC2D2AQ9P2K1 1620 aa38.94■■■■□ 3.82
SHISA4-201ENST00000362011 CECR2Q9BXF3 1484 aa38.87■■■■□ 3.81
SHISA4-201ENST00000362011 EIF4G1Q04637 1599 aaKnown RBP38.82■■■■□ 3.8
SHISA4-201ENST00000362011 DNAJC5Q9H3Z4 198 aa37.62■■■■□ 3.61
SHISA4-201ENST00000362011 NCAPD3P42695 1498 aa37.56■■■■□ 3.6
SHISA4-201ENST00000362011 ATAD2BQ9ULI0 1458 aa37.36■■■■□ 3.57
SHISA4-201ENST00000362011 BAZ1AQ9NRL2 1556 aaPredicted RBP37.34■■■■□ 3.57
SHISA4-201ENST00000362011 CUX2O14529 1486 aa37.32■■■■□ 3.57
SHISA4-201ENST00000362011 SMARCA4P51532 1647 aa37.28■■■■□ 3.56
SHISA4-201ENST00000362011 HMGXB3Q12766 1538 aa37.23■■■■□ 3.55
SHISA4-201ENST00000362011 SMARCA2P51531 1590 aa37.22■■■■□ 3.55
SHISA4-201ENST00000362011 MROH2BQ7Z745 1585 aa37.19■■■■□ 3.54
SHISA4-201ENST00000362011 ERCC6Q03468 1493 aa37.17■■■■□ 3.54
SHISA4-201ENST00000362011 RSF1Q96T23 1441 aaPredicted RBP37.06■■■■□ 3.52
SHISA4-201ENST00000362011 PEG3Q9GZU2 1588 aa36.95■■■■□ 3.51
SHISA4-201ENST00000362011 NESP48681 1621 aa36.95■■■■□ 3.51
SHISA4-201ENST00000362011 WIZO95785 1651 aa36.94■■■■□ 3.5
SHISA4-201ENST00000362011 BAZ1BQ9UIG0 1483 aaKnown RBP36.91■■■■□ 3.5
SHISA4-201ENST00000362011 SUPT5HO00267 1087 aaKnown RBP36.88■■■■□ 3.49
SHISA4-201ENST00000362011 LAMC3Q9Y6N6 1575 aa36.7■■■■□ 3.47
SHISA4-201ENST00000362011 THOC2Q8NI27 1593 aaKnown RBP36.68■■■■□ 3.46
SHISA4-201ENST00000362011 TOP2AP11388 1531 aaKnown RBP36.55■■■■□ 3.44
SHISA4-201ENST00000362011 PDS5BQ9NTI5 1447 aa36.47■■■■□ 3.43
SHISA4-201ENST00000362011 KIF21AQ7Z4S6 1674 aa36.44■■■■□ 3.42
SHISA4-201ENST00000362011 CADPSQ9ULU8 1353 aa36.36■■■■□ 3.41
SHISA4-201ENST00000362011 MRC2Q9UBG0 1479 aa36.17■■■■□ 3.38
SHISA4-201ENST00000362011 WDR62O43379 1518 aa36.13■■■■□ 3.37
SHISA4-201ENST00000362011 CCDC88BA6NC98 1476 aa36.05■■■■□ 3.36
SHISA4-201ENST00000362011 CEP164Q9UPV0 1460 aa35.95■■■■□ 3.35
SHISA4-201ENST00000362011 CFTRP13569 1480 aa35.92■■■■□ 3.34
SHISA4-201ENST00000362011 FANCD2Q9BXW9 1451 aa35.9■■■■□ 3.34
SHISA4-201ENST00000362011 TRIM41Q8WV44 630 aa35.67■■■■□ 3.3
SHISA4-201ENST00000362011 PRDM2Q13029 1718 aa35.67■■■■□ 3.3
SHISA4-201ENST00000362011 URB2Q14146 1524 aaKnown RBP35.66■■■■□ 3.3
SHISA4-201ENST00000362011 OSCARQ8IYS5 282 aa35.52■■■■□ 3.28
SHISA4-201ENST00000362011 IFT140Q96RY7 1462 aa35.28■■■■□ 3.24
SHISA4-201ENST00000362011 ZNF608Q9ULD9 1512 aaPredicted RBP35.24■■■■□ 3.23
SHISA4-201ENST00000362011 TOPBP1Q92547 1522 aa35.21■■■■□ 3.23
SHISA4-201ENST00000362011 ABCC8Q09428 1581 aa35.14■■■■□ 3.22
SHISA4-201ENST00000362011 RIMBP3CA6NJZ7 1639 aa35.09■■■■□ 3.21
SHISA4-201ENST00000362011 RIMBP3BA6NNM3 1639 aa35.09■■■■□ 3.21
SHISA4-201ENST00000362011 RIMBP3Q9UFD9 1639 aa35.09■■■■□ 3.21
SHISA4-201ENST00000362011 DNMBPQ6XZF7 1577 aa35.05■■■■□ 3.2
SHISA4-201ENST00000362011 EIF4G3O43432 1585 aaKnown RBP35.01■■■■□ 3.19
SHISA4-201ENST00000362011 CHIC1Q5VXU3 224 aa35.01■■■■□ 3.19
SHISA4-201ENST00000362011 ARHGEF11O15085 1522 aa34.97■■■■□ 3.19
SHISA4-201ENST00000362011 WRNQ14191 1432 aaPredicted RBP eCLIP34.95■■■■□ 3.18
SHISA4-201ENST00000362011 TARBP1Q13395 1621 aaKnown RBP34.94■■■■□ 3.18
SHISA4-201ENST00000362011 BIVM-ERCC5R4GMW8 1640 aa34.9■■■■□ 3.18
SHISA4-201ENST00000362011 SYNJ1O43426 1573 aa34.9■■■■□ 3.18
SHISA4-201ENST00000362011 AQRO60306 1485 aaKnown RBP eCLIP34.86■■■■□ 3.17
SHISA4-201ENST00000362011 TOP2BQ02880 1626 aa34.85■■■■□ 3.17
SHISA4-201ENST00000362011 CUX1P39880 1505 aa34.84■■■■□ 3.17
SHISA4-201ENST00000362011 POLA1P09884 1462 aaPredicted RBP34.84■■■■□ 3.17
SHISA4-201ENST00000362011 CHD1O14646 1710 aa34.76■■■■□ 3.15
SHISA4-201ENST00000362011 RAD54L2Q9Y4B4 1467 aa34.68■■■■□ 3.14
SHISA4-201ENST00000362011 CYB5RLQ6IPT4 315 aa34.66■■■■□ 3.14
SHISA4-201ENST00000362011 SOGA1O94964 1423 aa34.65■■■■□ 3.14
SHISA4-201ENST00000362011 ARAP1Q96P48 1450 aa34.62■■■■□ 3.13
SHISA4-201ENST00000362011 WDR97A6NE52 1622 aa34.6■■■■□ 3.13
SHISA4-201ENST00000362011 TDRD9Q8NDG6 1382 aaKnown RBP34.59■■■■□ 3.13
SHISA4-201ENST00000362011 FBLN2P98095 1184 aa34.57■■■■□ 3.13
SHISA4-201ENST00000362011 FGD5Q6ZNL6 1462 aa34.55■■■■□ 3.12
SHISA4-201ENST00000362011 SNAPC4Q5SXM2 1469 aa34.49■■■■□ 3.11
SHISA4-201ENST00000362011 CLASP1Q7Z460 1538 aa34.46■■■■□ 3.11
SHISA4-201ENST00000362011 MAGI1Q96QZ7 1491 aaPredicted RBP34.44■■■■□ 3.1
SHISA4-201ENST00000362011 GRIN2BQ13224 1484 aa34.39■■■■□ 3.1
SHISA4-201ENST00000362011 CHMP7Q8WUX9 453 aaPredicted RBP34.34■■■■□ 3.09
SHISA4-201ENST00000362011 SYNJ2O15056 1496 aa34.32■■■■□ 3.08
SHISA4-201ENST00000362011 TRHP20396 242 aaPredicted RBP34.29■■■■□ 3.08
SHISA4-201ENST00000362011 ABCA10Q8WWZ4 1543 aa34.25■■■■□ 3.07
SHISA4-201ENST00000362011 GAPVD1Q14C86 1478 aa34.23■■■■□ 3.07
SHISA4-201ENST00000362011 PBRM1Q86U86 1689 aa34.18■■■■□ 3.06
SHISA4-201ENST00000362011 EEA1Q15075 1411 aa34.18■■■■□ 3.06
SHISA4-201ENST00000362011 RUSC2Q8N2Y8 1516 aa34.16■■■■□ 3.06
SHISA4-201ENST00000362011 ABCA5Q8WWZ7 1642 aa34.16■■■■□ 3.06
SHISA4-201ENST00000362011 KIF27Q86VH2 1401 aa34.13■■■■□ 3.05
SHISA4-201ENST00000362011 FAM9AQ8IZU1 332 aaPredicted RBP34.05■■■■□ 3.04
SHISA4-201ENST00000362011 GRIN2AQ12879 1464 aa33.95■■■■□ 3.03
SHISA4-201ENST00000362011 CSRNP3Q8WYN3 585 aa33.91■■■■□ 3.02
SHISA4-201ENST00000362011 NUP160Q12769 1436 aa33.91■■■■□ 3.02
SHISA4-201ENST00000362011 ERICH3Q5RHP9 1530 aa33.89■■■■□ 3.02
SHISA4-201ENST00000362011 ADAMTS12P58397 1594 aa33.89■■■■□ 3.02
SHISA4-201ENST00000362011 CUL7Q14999 1698 aa33.88■■■■□ 3.01
SHISA4-201ENST00000362011 ERCC6L2Q5T890 1561 aa33.85■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms