Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.45■□□□□ 0.54
ABCA4P78363 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
ABCA4P78363 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
ABCA4P78363 LINC00526-201ENST00000581067 1875 ntBASIC18.45■□□□□ 0.54
ABCA4P78363 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA4P78363 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA4P78363 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA4P78363 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.44■□□□□ 0.54
ABCA4P78363 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
ABCA4P78363 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.44■□□□□ 0.54
ABCA4P78363 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.44■□□□□ 0.54
ABCA4P78363 AC068338.2-201ENST00000563278 1430 ntBASIC18.44■□□□□ 0.54
ABCA4P78363 AP004607.7-201ENST00000527152 1677 ntBASIC18.44■□□□□ 0.54
ABCA4P78363 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.44■□□□□ 0.54
ABCA4P78363 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.44■□□□□ 0.54
ABCA4P78363 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA4P78363 AC105036.2-201ENST00000569468 176 ntBASIC18.44■□□□□ 0.54
ABCA4P78363 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
ABCA4P78363 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA4P78363 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA4P78363 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA4P78363 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ABCA4P78363 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA4P78363 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ABCA4P78363 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.43■□□□□ 0.54
ABCA4P78363 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 MKRN4P-201ENST00000444706 1521 ntBASIC18.43■□□□□ 0.54
ABCA4P78363 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA4P78363 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 KRT18P20-201ENST00000548986 1279 ntBASIC18.43■□□□□ 0.54
ABCA4P78363 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA4P78363 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA4P78363 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.42■□□□□ 0.54
ABCA4P78363 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 OR7E47P-201ENST00000546390 1422 ntBASIC18.42■□□□□ 0.54
ABCA4P78363 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
ABCA4P78363 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.42■□□□□ 0.54
ABCA4P78363 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.42■□□□□ 0.54
ABCA4P78363 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCA4P78363 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
ABCA4P78363 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
ABCA4P78363 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ABCA4P78363 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCA4P78363 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.41■□□□□ 0.54
ABCA4P78363 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.41■□□□□ 0.54
ABCA4P78363 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
ABCA4P78363 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.41■□□□□ 0.54
ABCA4P78363 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCA4P78363 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.41■□□□□ 0.54
ABCA4P78363 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCA4P78363 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
ABCA4P78363 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCA4P78363 RNA5SP413-201ENST00000516373 109 ntBASIC18.4■□□□□ 0.54
ABCA4P78363 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCA4P78363 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCA4P78363 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.4■□□□□ 0.54
ABCA4P78363 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
ABCA4P78363 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
ABCA4P78363 AC133041.1-202ENST00000642053 222 ntBASIC18.4■□□□□ 0.54
ABCA4P78363 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCA4P78363 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.4■□□□□ 0.54
ABCA4P78363 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCA4P78363 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCA4P78363 AL034346.1-201ENST00000568244 1277 ntBASIC18.4■□□□□ 0.54
ABCA4P78363 SLC7A5P1-201ENST00000568957 537 ntBASIC18.4■□□□□ 0.54
ABCA4P78363 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
ABCA4P78363 AC083880.1-201ENST00000608266 535 ntBASIC18.4■□□□□ 0.54
ABCA4P78363 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCA4P78363 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
ABCA4P78363 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
ABCA4P78363 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCA4P78363 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
ABCA4P78363 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.39■□□□□ 0.54
ABCA4P78363 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.39■□□□□ 0.53
ABCA4P78363 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms