RNA–Protein interactions for RNA: ENST00000352957.8

MRPL39-202, Transcript of mitochondrial ribosomal protein L39, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MRPL39, Length 1,110 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL39-202ENST00000352957 NISCHQ9Y2I1 1504 aa51■■■■■ 5.75
MRPL39-202ENST00000352957 CCDC180Q9P1Z9 1646 aa45.48■■■■■ 4.87
MRPL39-202ENST00000352957 ABCC9O60706 1549 aa44.66■■■■■ 4.74
MRPL39-202ENST00000352957 RB1CC1Q8TDY2 1594 aa42.87■■■■■ 4.45
MRPL39-202ENST00000352957 NACADO15069 1562 aa42.76■■■■■ 4.44
MRPL39-202ENST00000352957 DCAF8L2P0C7V8 631 aa42.67■■■■■ 4.42
MRPL39-202ENST00000352957 ZCCHC6Q5VYS8 1495 aaKnown RBP42.44■■■■■ 4.38
MRPL39-202ENST00000352957 MYO15BQ96JP2 1530 aa42.41■■■■■ 4.38
MRPL39-202ENST00000352957 DCAF1Q9Y4B6 1507 aa42.16■■■■■ 4.34
MRPL39-202ENST00000352957 UNC13AQ9UPW8 1703 aa42.02■■■■■ 4.32
MRPL39-202ENST00000352957 PABPN1Q86U42 306 aaKnown RBP eCLIP41.68■■■■■ 4.26
MRPL39-202ENST00000352957 BICRAQ9NZM4 1560 aa41.62■■■■■ 4.25
MRPL39-202ENST00000352957 SCRIBQ14160 1630 aa41.5■■■■■ 4.23
MRPL39-202ENST00000352957 DNAJC5BQ9UF47 199 aa41.16■■■■■ 4.18
MRPL39-202ENST00000352957 SHROOM4Q9ULL8 1493 aa41.08■■■■■ 4.17
MRPL39-202ENST00000352957 EIF4G1Q04637 1599 aaKnown RBP40.52■■■■■ 4.08
MRPL39-202ENST00000352957 CC2D2AQ9P2K1 1620 aa40.42■■■■■ 4.06
MRPL39-202ENST00000352957 CECR2Q9BXF3 1484 aa40.13■■■■■ 4.02
MRPL39-202ENST00000352957 SMARCA4P51532 1647 aa39.65■■■■□ 3.94
MRPL39-202ENST00000352957 BAZ1AQ9NRL2 1556 aaPredicted RBP39.55■■■■□ 3.92
MRPL39-202ENST00000352957 ATAD2BQ9ULI0 1458 aa39.44■■■■□ 3.9
MRPL39-202ENST00000352957 NCAPD3P42695 1498 aa39.43■■■■□ 3.9
MRPL39-202ENST00000352957 SMARCA2P51531 1590 aa39.39■■■■□ 3.9
MRPL39-202ENST00000352957 MROH2BQ7Z745 1585 aa39.33■■■■□ 3.89
MRPL39-202ENST00000352957 HMGXB3Q12766 1538 aa39.25■■■■□ 3.87
MRPL39-202ENST00000352957 PEG3Q9GZU2 1588 aa39.24■■■■□ 3.87
MRPL39-202ENST00000352957 BAZ1BQ9UIG0 1483 aaKnown RBP39.12■■■■□ 3.85
MRPL39-202ENST00000352957 WIZO95785 1651 aa38.94■■■■□ 3.82
MRPL39-202ENST00000352957 RSF1Q96T23 1441 aaPredicted RBP38.77■■■■□ 3.8
MRPL39-202ENST00000352957 NESP48681 1621 aa38.61■■■■□ 3.77
MRPL39-202ENST00000352957 ERCC6Q03468 1493 aa38.49■■■■□ 3.75
MRPL39-202ENST00000352957 LAMC3Q9Y6N6 1575 aa38.47■■■■□ 3.75
MRPL39-202ENST00000352957 TOP2AP11388 1531 aaKnown RBP38.46■■■■□ 3.75
MRPL39-202ENST00000352957 CADPSQ9ULU8 1353 aa38.27■■■■□ 3.72
MRPL39-202ENST00000352957 KIF21AQ7Z4S6 1674 aa38.21■■■■□ 3.71
MRPL39-202ENST00000352957 PDS5BQ9NTI5 1447 aa38.16■■■■□ 3.7
MRPL39-202ENST00000352957 CUX2O14529 1486 aa38.15■■■■□ 3.7
MRPL39-202ENST00000352957 THOC2Q8NI27 1593 aaKnown RBP38.1■■■■□ 3.69
MRPL39-202ENST00000352957 CFTRP13569 1480 aa38.02■■■■□ 3.68
MRPL39-202ENST00000352957 CCDC88BA6NC98 1476 aa38■■■■□ 3.67
MRPL39-202ENST00000352957 FANCD2Q9BXW9 1451 aa37.86■■■■□ 3.65
MRPL39-202ENST00000352957 PRDM2Q13029 1718 aa37.84■■■■□ 3.65
MRPL39-202ENST00000352957 CEP164Q9UPV0 1460 aa37.84■■■■□ 3.65
MRPL39-202ENST00000352957 MRC2Q9UBG0 1479 aa37.82■■■■□ 3.64
MRPL39-202ENST00000352957 WDR62O43379 1518 aa37.71■■■■□ 3.63
MRPL39-202ENST00000352957 SUPT5HO00267 1087 aaKnown RBP37.64■■■■□ 3.62
MRPL39-202ENST00000352957 URB2Q14146 1524 aaKnown RBP37.52■■■■□ 3.6
MRPL39-202ENST00000352957 TOPBP1Q92547 1522 aa37.25■■■■□ 3.55
MRPL39-202ENST00000352957 DNMBPQ6XZF7 1577 aa37.2■■■■□ 3.55
MRPL39-202ENST00000352957 ABCC8Q09428 1581 aa37.18■■■■□ 3.54
MRPL39-202ENST00000352957 DNAJC5Q9H3Z4 198 aa37.18■■■■□ 3.54
MRPL39-202ENST00000352957 IFT140Q96RY7 1462 aa37.03■■■■□ 3.52
MRPL39-202ENST00000352957 ZNF608Q9ULD9 1512 aaPredicted RBP36.92■■■■□ 3.5
MRPL39-202ENST00000352957 CUX1P39880 1505 aa36.91■■■■□ 3.5
MRPL39-202ENST00000352957 POLA1P09884 1462 aaPredicted RBP36.91■■■■□ 3.5
MRPL39-202ENST00000352957 TARBP1Q13395 1621 aaKnown RBP36.88■■■■□ 3.5
MRPL39-202ENST00000352957 FGD5Q6ZNL6 1462 aa36.81■■■■□ 3.48
MRPL39-202ENST00000352957 EIF4G3O43432 1585 aaKnown RBP36.8■■■■□ 3.48
MRPL39-202ENST00000352957 RAD54L2Q9Y4B4 1467 aa36.76■■■■□ 3.48
MRPL39-202ENST00000352957 SOGA1O94964 1423 aa36.74■■■■□ 3.47
MRPL39-202ENST00000352957 AQRO60306 1485 aaKnown RBP eCLIP36.67■■■■□ 3.462e-7■■■■■ 28.9
MRPL39-202ENST00000352957 WDR97A6NE52 1622 aa36.58■■■■□ 3.45
MRPL39-202ENST00000352957 BIVM-ERCC5R4GMW8 1640 aa36.56■■■■□ 3.44
MRPL39-202ENST00000352957 TDRD9Q8NDG6 1382 aaKnown RBP36.56■■■■□ 3.44
MRPL39-202ENST00000352957 WRNQ14191 1432 aaPredicted RBP eCLIP36.56■■■■□ 3.44
MRPL39-202ENST00000352957 SYNJ1O43426 1573 aa36.54■■■■□ 3.44
MRPL39-202ENST00000352957 TOP2BQ02880 1626 aa36.54■■■■□ 3.44
MRPL39-202ENST00000352957 OSCARQ8IYS5 282 aa36.5■■■■□ 3.43
MRPL39-202ENST00000352957 ABCA10Q8WWZ4 1543 aa36.42■■■■□ 3.42
MRPL39-202ENST00000352957 CHD1O14646 1710 aa36.42■■■■□ 3.42
MRPL39-202ENST00000352957 PBRM1Q86U86 1689 aa36.35■■■■□ 3.41
MRPL39-202ENST00000352957 SNAPC4Q5SXM2 1469 aa36.34■■■■□ 3.41
MRPL39-202ENST00000352957 ABCA5Q8WWZ7 1642 aa36.34■■■■□ 3.41
MRPL39-202ENST00000352957 GRIN2BQ13224 1484 aa36.33■■■■□ 3.41
MRPL39-202ENST00000352957 GAPVD1Q14C86 1478 aa36.32■■■■□ 3.41
MRPL39-202ENST00000352957 MAGI1Q96QZ7 1491 aaPredicted RBP36.26■■■■□ 3.4
MRPL39-202ENST00000352957 FBLN2P98095 1184 aa36.25■■■■□ 3.39
MRPL39-202ENST00000352957 SYNJ2O15056 1496 aa36.12■■■■□ 3.37
MRPL39-202ENST00000352957 CHMP7Q8WUX9 453 aaPredicted RBP36.1■■■■□ 3.37
MRPL39-202ENST00000352957 RIMBP3CA6NJZ7 1639 aa36.04■■■■□ 3.36
MRPL39-202ENST00000352957 RIMBP3BA6NNM3 1639 aa36.04■■■■□ 3.36
MRPL39-202ENST00000352957 RIMBP3Q9UFD9 1639 aa36.04■■■■□ 3.36
MRPL39-202ENST00000352957 ADAMTS12P58397 1594 aa36■■■■□ 3.35
MRPL39-202ENST00000352957 ERICH3Q5RHP9 1530 aa35.98■■■■□ 3.35
MRPL39-202ENST00000352957 ARHGEF11O15085 1522 aa35.97■■■■□ 3.35
MRPL39-202ENST00000352957 CLASP1Q7Z460 1538 aa35.95■■■■□ 3.35
MRPL39-202ENST00000352957 TRIM41Q8WV44 630 aa35.92■■■■□ 3.34
MRPL39-202ENST00000352957 GRIN2AQ12879 1464 aa35.88■■■■□ 3.33
MRPL39-202ENST00000352957 FHAD1B1AJZ9 1412 aa35.88■■■■□ 3.33
MRPL39-202ENST00000352957 KIF27Q86VH2 1401 aa35.79■■■■□ 3.32
MRPL39-202ENST00000352957 CEP170Q5SW79 1584 aa35.75■■■■□ 3.31
MRPL39-202ENST00000352957 NUP160Q12769 1436 aa35.72■■■■□ 3.31
MRPL39-202ENST00000352957 ARAP1Q96P48 1450 aa35.67■■■■□ 3.3
MRPL39-202ENST00000352957 IGF1RP08069 1367 aa35.67■■■■□ 3.3
MRPL39-202ENST00000352957 CUL7Q14999 1698 aa35.65■■■■□ 3.3
MRPL39-202ENST00000352957 CYB5RLQ6IPT4 315 aa35.61■■■■□ 3.29
MRPL39-202ENST00000352957 SHROOM2Q13796 1616 aa35.52■■■■□ 3.28
MRPL39-202ENST00000352957 RUSC2Q8N2Y8 1516 aa35.48■■■■□ 3.27
MRPL39-202ENST00000352957 ERCC6L2Q5T890 1561 aa35.47■■■■□ 3.27
MRPL39-202ENST00000352957 CARMIL1Q5VZK9 1371 aa35.46■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms