RNA–Protein interactions for RNA: ENST00000440053.1

VIL1-204, Transcript of villin 1, humanhuman

TSL 1 (best) BASIC

Gene VIL1, Length 1,454 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIL1-204ENST00000440053 NISCHQ9Y2I1 1504 aa51.02■■■■■ 5.76
VIL1-204ENST00000440053 CCDC180Q9P1Z9 1646 aa45.38■■■■■ 4.86
VIL1-204ENST00000440053 ABCC9O60706 1549 aa45.13■■■■■ 4.82
VIL1-204ENST00000440053 DCAF8L2P0C7V8 631 aa43.09■■■■■ 4.49
VIL1-204ENST00000440053 RB1CC1Q8TDY2 1594 aa43.02■■■■■ 4.48
VIL1-204ENST00000440053 NACADO15069 1562 aa42.85■■■■■ 4.45
VIL1-204ENST00000440053 MYO15BQ96JP2 1530 aa42.38■■■■■ 4.37
VIL1-204ENST00000440053 ZCCHC6Q5VYS8 1495 aaKnown RBP42.36■■■■■ 4.37
VIL1-204ENST00000440053 PABPN1Q86U42 306 aaKnown RBP eCLIP42.23■■■■■ 4.35
VIL1-204ENST00000440053 DCAF1Q9Y4B6 1507 aa42.07■■■■■ 4.32
VIL1-204ENST00000440053 UNC13AQ9UPW8 1703 aa42.06■■■■■ 4.32
VIL1-204ENST00000440053 DNAJC5BQ9UF47 199 aa42.01■■■■■ 4.32
VIL1-204ENST00000440053 BICRAQ9NZM4 1560 aa41.83■■■■■ 4.29
VIL1-204ENST00000440053 SCRIBQ14160 1630 aa41.56■■■■■ 4.24
VIL1-204ENST00000440053 SHROOM4Q9ULL8 1493 aa41.12■■■■■ 4.17
VIL1-204ENST00000440053 EIF4G1Q04637 1599 aaKnown RBP40.73■■■■■ 4.11
VIL1-204ENST00000440053 CC2D2AQ9P2K1 1620 aa40.71■■■■■ 4.11
VIL1-204ENST00000440053 CECR2Q9BXF3 1484 aa40.54■■■■■ 4.08
VIL1-204ENST00000440053 SMARCA4P51532 1647 aa39.64■■■■□ 3.94
VIL1-204ENST00000440053 NCAPD3P42695 1498 aa39.63■■■■□ 3.93
VIL1-204ENST00000440053 ATAD2BQ9ULI0 1458 aa39.62■■■■□ 3.93
VIL1-204ENST00000440053 BAZ1AQ9NRL2 1556 aaPredicted RBP39.51■■■■□ 3.92
VIL1-204ENST00000440053 SMARCA2P51531 1590 aa39.43■■■■□ 3.9
VIL1-204ENST00000440053 MROH2BQ7Z745 1585 aa39.38■■■■□ 3.9
VIL1-204ENST00000440053 HMGXB3Q12766 1538 aa39.29■■■■□ 3.88
VIL1-204ENST00000440053 BAZ1BQ9UIG0 1483 aaKnown RBP39.23■■■■□ 3.87
VIL1-204ENST00000440053 PEG3Q9GZU2 1588 aa39.2■■■■□ 3.87
VIL1-204ENST00000440053 NESP48681 1621 aa38.94■■■■□ 3.82
VIL1-204ENST00000440053 WIZO95785 1651 aa38.91■■■■□ 3.82
VIL1-204ENST00000440053 ERCC6Q03468 1493 aa38.85■■■■□ 3.81
VIL1-204ENST00000440053 RSF1Q96T23 1441 aaPredicted RBP38.77■■■■□ 3.8
VIL1-204ENST00000440053 LAMC3Q9Y6N6 1575 aa38.57■■■■□ 3.77
VIL1-204ENST00000440053 CUX2O14529 1486 aa38.52■■■■□ 3.76
VIL1-204ENST00000440053 CADPSQ9ULU8 1353 aa38.49■■■■□ 3.75
VIL1-204ENST00000440053 PDS5BQ9NTI5 1447 aa38.4■■■■□ 3.74
VIL1-204ENST00000440053 TOP2AP11388 1531 aaKnown RBP38.38■■■■□ 3.73
VIL1-204ENST00000440053 KIF21AQ7Z4S6 1674 aa38.33■■■■□ 3.73
VIL1-204ENST00000440053 THOC2Q8NI27 1593 aaKnown RBP38.28■■■■□ 3.72
VIL1-204ENST00000440053 CFTRP13569 1480 aa38.13■■■■□ 3.69
VIL1-204ENST00000440053 DNAJC5Q9H3Z4 198 aa38.07■■■■□ 3.68
VIL1-204ENST00000440053 CCDC88BA6NC98 1476 aa38.06■■■■□ 3.68
VIL1-204ENST00000440053 FANCD2Q9BXW9 1451 aa38.03■■■■□ 3.68
VIL1-204ENST00000440053 MRC2Q9UBG0 1479 aa38.03■■■■□ 3.68
VIL1-204ENST00000440053 CEP164Q9UPV0 1460 aa37.99■■■■□ 3.67
VIL1-204ENST00000440053 WDR62O43379 1518 aa37.88■■■■□ 3.66
VIL1-204ENST00000440053 URB2Q14146 1524 aaKnown RBP37.71■■■■□ 3.63
VIL1-204ENST00000440053 SUPT5HO00267 1087 aaKnown RBP37.63■■■■□ 3.61
VIL1-204ENST00000440053 PRDM2Q13029 1718 aa37.61■■■■□ 3.61
VIL1-204ENST00000440053 TOPBP1Q92547 1522 aa37.37■■■■□ 3.57
VIL1-204ENST00000440053 ABCC8Q09428 1581 aa37.23■■■■□ 3.55
VIL1-204ENST00000440053 DNMBPQ6XZF7 1577 aa37.22■■■■□ 3.55
VIL1-204ENST00000440053 ZNF608Q9ULD9 1512 aaPredicted RBP37.2■■■■□ 3.55
VIL1-204ENST00000440053 IFT140Q96RY7 1462 aa37.2■■■■□ 3.55
VIL1-204ENST00000440053 POLA1P09884 1462 aaPredicted RBP37.03■■■■□ 3.52
VIL1-204ENST00000440053 OSCARQ8IYS5 282 aa37.01■■■■□ 3.52
VIL1-204ENST00000440053 RAD54L2Q9Y4B4 1467 aa36.97■■■■□ 3.51
VIL1-204ENST00000440053 TARBP1Q13395 1621 aaKnown RBP36.97■■■■□ 3.51
VIL1-204ENST00000440053 AQRO60306 1485 aaKnown RBP eCLIP36.96■■■■□ 3.513e-7■■■□□ 18.6
VIL1-204ENST00000440053 CUX1P39880 1505 aa36.94■■■■□ 3.5
VIL1-204ENST00000440053 SOGA1O94964 1423 aa36.92■■■■□ 3.5
VIL1-204ENST00000440053 EIF4G3O43432 1585 aaKnown RBP36.9■■■■□ 3.5
VIL1-204ENST00000440053 FGD5Q6ZNL6 1462 aa36.88■■■■□ 3.49
VIL1-204ENST00000440053 TDRD9Q8NDG6 1382 aaKnown RBP36.84■■■■□ 3.49
VIL1-204ENST00000440053 TRIM41Q8WV44 630 aa36.7■■■■□ 3.47
VIL1-204ENST00000440053 FBLN2P98095 1184 aa36.68■■■■□ 3.46
VIL1-204ENST00000440053 SNAPC4Q5SXM2 1469 aa36.52■■■■□ 3.44
VIL1-204ENST00000440053 WRNQ14191 1432 aaPredicted RBP eCLIP36.52■■■■□ 3.44
VIL1-204ENST00000440053 CHD1O14646 1710 aa36.52■■■■□ 3.44
VIL1-204ENST00000440053 WDR97A6NE52 1622 aa36.48■■■■□ 3.43
VIL1-204ENST00000440053 SYNJ1O43426 1573 aa36.46■■■■□ 3.43
VIL1-204ENST00000440053 GRIN2BQ13224 1484 aa36.46■■■■□ 3.43
VIL1-204ENST00000440053 ABCA10Q8WWZ4 1543 aa36.45■■■■□ 3.43
VIL1-204ENST00000440053 GAPVD1Q14C86 1478 aa36.44■■■■□ 3.42
VIL1-204ENST00000440053 TOP2BQ02880 1626 aa36.43■■■■□ 3.42
VIL1-204ENST00000440053 CHMP7Q8WUX9 453 aaPredicted RBP36.43■■■■□ 3.42
VIL1-204ENST00000440053 BIVM-ERCC5R4GMW8 1640 aa36.39■■■■□ 3.42
VIL1-204ENST00000440053 RIMBP3CA6NJZ7 1639 aa36.37■■■■□ 3.41
VIL1-204ENST00000440053 RIMBP3BA6NNM3 1639 aa36.37■■■■□ 3.41
VIL1-204ENST00000440053 RIMBP3Q9UFD9 1639 aa36.37■■■■□ 3.41
VIL1-204ENST00000440053 MAGI1Q96QZ7 1491 aaPredicted RBP36.36■■■■□ 3.41
VIL1-204ENST00000440053 ARHGEF11O15085 1522 aa36.32■■■■□ 3.41
VIL1-204ENST00000440053 ABCA5Q8WWZ7 1642 aa36.31■■■■□ 3.4
VIL1-204ENST00000440053 PBRM1Q86U86 1689 aa36.29■■■■□ 3.4
VIL1-204ENST00000440053 SYNJ2O15056 1496 aa36.28■■■■□ 3.4
VIL1-204ENST00000440053 CYB5RLQ6IPT4 315 aa36.18■■■■□ 3.38
VIL1-204ENST00000440053 CLASP1Q7Z460 1538 aa36.12■■■■□ 3.37
VIL1-204ENST00000440053 ARAP1Q96P48 1450 aa36.04■■■■□ 3.36
VIL1-204ENST00000440053 ADAMTS12P58397 1594 aa36■■■■□ 3.35
VIL1-204ENST00000440053 GRIN2AQ12879 1464 aa35.99■■■■□ 3.35
VIL1-204ENST00000440053 FHAD1B1AJZ9 1412 aa35.98■■■■□ 3.35
VIL1-204ENST00000440053 ERICH3Q5RHP9 1530 aa35.97■■■■□ 3.35
VIL1-204ENST00000440053 CEP170Q5SW79 1584 aa35.86■■■■□ 3.33
VIL1-204ENST00000440053 NUP160Q12769 1436 aa35.86■■■■□ 3.33
VIL1-204ENST00000440053 IGF1RP08069 1367 aa35.8■■■■□ 3.32
VIL1-204ENST00000440053 KIF27Q86VH2 1401 aa35.77■■■■□ 3.32
VIL1-204ENST00000440053 ERCC6L2Q5T890 1561 aa35.72■■■■□ 3.31
VIL1-204ENST00000440053 JPH4Q96JJ6 628 aa35.61■■■■□ 3.29
VIL1-204ENST00000440053 TRHP20396 242 aaPredicted RBP35.6■■■■□ 3.29
VIL1-204ENST00000440053 SHROOM2Q13796 1616 aa35.57■■■■□ 3.29
VIL1-204ENST00000440053 CARMIL1Q5VZK9 1371 aa35.54■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms