Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC17.62■□□□□ 0.41
HSPG2P98160 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HSPG2P98160 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HSPG2P98160 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC17.61■□□□□ 0.41
HSPG2P98160 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HSPG2P98160 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.61■□□□□ 0.41
HSPG2P98160 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HSPG2P98160 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HSPG2P98160 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HSPG2P98160 MIR3648-2-201ENST00000581792 180 ntBASIC17.6■□□□□ 0.41
HSPG2P98160 MIR3648-1-201ENST00000615959 180 ntBASIC17.6■□□□□ 0.41
HSPG2P98160 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
HSPG2P98160 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HSPG2P98160 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.59■□□□□ 0.41
HSPG2P98160 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
HSPG2P98160 CR559946.2-201ENST00000623684 991 ntBASIC17.58■□□□□ 0.41
HSPG2P98160 AC021231.2-201ENST00000594613 730 ntBASIC17.58■□□□□ 0.4
HSPG2P98160 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HSPG2P98160 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HSPG2P98160 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.58■□□□□ 0.4
HSPG2P98160 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HSPG2P98160 RNF166-209ENST00000567844 633 ntTSL 5 BASIC17.56■□□□□ 0.4
HSPG2P98160 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HSPG2P98160 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HSPG2P98160 AC016575.1-201ENST00000607026 382 ntBASIC17.54■□□□□ 0.4
HSPG2P98160 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HSPG2P98160 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.52■□□□□ 0.4
HSPG2P98160 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC17.52■□□□□ 0.4
HSPG2P98160 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HSPG2P98160 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HSPG2P98160 ABHD17AP3-201ENST00000503096 1137 ntBASIC17.49■□□□□ 0.39
HSPG2P98160 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HSPG2P98160 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.49■□□□□ 0.39
HSPG2P98160 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HSPG2P98160 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HSPG2P98160 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC17.47■□□□□ 0.39
HSPG2P98160 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HSPG2P98160 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
HSPG2P98160 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HSPG2P98160 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.45■□□□□ 0.38
HSPG2P98160 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC17.44■□□□□ 0.38
HSPG2P98160 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HSPG2P98160 GDI1-215ENST00000630693 786 ntTSL 4 BASIC17.44■□□□□ 0.38
HSPG2P98160 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC17.44■□□□□ 0.38
HSPG2P98160 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HSPG2P98160 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
HSPG2P98160 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HSPG2P98160 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.43■□□□□ 0.38
HSPG2P98160 DUX4L29-201ENST00000425409 679 ntBASIC17.43■□□□□ 0.38
HSPG2P98160 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC17.43■□□□□ 0.38
HSPG2P98160 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HSPG2P98160 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC17.41■□□□□ 0.38
HSPG2P98160 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.4■□□□□ 0.38
HSPG2P98160 RARRES2P2-201ENST00000394842 485 ntBASIC17.4■□□□□ 0.38
HSPG2P98160 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HSPG2P98160 ILK-212ENST00000532063 1617 ntTSL 2 BASIC17.39■□□□□ 0.38
HSPG2P98160 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HSPG2P98160 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC17.38■□□□□ 0.37
HSPG2P98160 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC17.38■□□□□ 0.37
HSPG2P98160 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HSPG2P98160 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HSPG2P98160 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HSPG2P98160 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HSPG2P98160 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HSPG2P98160 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HSPG2P98160 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HSPG2P98160 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HSPG2P98160 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HSPG2P98160 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HSPG2P98160 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HSPG2P98160 LINC01971-201ENST00000617888 1048 ntBASIC17.33■□□□□ 0.37
HSPG2P98160 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HSPG2P98160 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HSPG2P98160 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC17.32■□□□□ 0.36
HSPG2P98160 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HSPG2P98160 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
HSPG2P98160 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC17.32■□□□□ 0.36
HSPG2P98160 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HSPG2P98160 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC17.3■□□□□ 0.36
HSPG2P98160 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HSPG2P98160 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HSPG2P98160 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HSPG2P98160 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HSPG2P98160 ABHD17AP5-201ENST00000580133 923 ntBASIC17.28■□□□□ 0.36
HSPG2P98160 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HSPG2P98160 MIR6090-201ENST00000622481 60 ntBASIC17.28■□□□□ 0.36
HSPG2P98160 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HSPG2P98160 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HSPG2P98160 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.26■□□□□ 0.35
HSPG2P98160 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC17.26■□□□□ 0.35
HSPG2P98160 DUX4L11-201ENST00000611504 1267 ntBASIC17.26■□□□□ 0.35
HSPG2P98160 DUX4L12-201ENST00000614593 1267 ntBASIC17.26■□□□□ 0.35
HSPG2P98160 DUX4L14-201ENST00000621227 1267 ntBASIC17.26■□□□□ 0.35
HSPG2P98160 WASH5P-204ENST00000632292 975 ntBASIC17.26■□□□□ 0.35
HSPG2P98160 RPS2-209ENST00000529806 993 ntTSL 3 BASIC17.25■□□□□ 0.35
HSPG2P98160 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HSPG2P98160 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HSPG2P98160 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HSPG2P98160 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC17.23■□□□□ 0.35
HSPG2P98160 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms