Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
CTCFP49711 GDI1-215ENST00000630693 786 ntTSL 4 BASIC32.48■■■□□ 2.79
CTCFP49711 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CTCFP49711 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CTCFP49711 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
CTCFP49711 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC32.47■■■□□ 2.79
CTCFP49711 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.46■■■□□ 2.79
CTCFP49711 RNF166-209ENST00000567844 633 ntTSL 5 BASIC32.46■■■□□ 2.79
CTCFP49711 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.43■■■□□ 2.78
CTCFP49711 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC32.43■■■□□ 2.78
CTCFP49711 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CTCFP49711 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.41■■■□□ 2.78
CTCFP49711 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CTCFP49711 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC32.39■■■□□ 2.78
CTCFP49711 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC32.38■■■□□ 2.77
CTCFP49711 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.37■■■□□ 2.77
CTCFP49711 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.37■■■□□ 2.77
CTCFP49711 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC32.37■■■□□ 2.77
CTCFP49711 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC32.36■■■□□ 2.77
CTCFP49711 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CTCFP49711 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.34■■■□□ 2.77
CTCFP49711 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC32.34■■■□□ 2.77
CTCFP49711 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC32.33■■■□□ 2.77
CTCFP49711 AC021231.2-201ENST00000594613 730 ntBASIC32.33■■■□□ 2.77
CTCFP49711 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.33■■■□□ 2.77
CTCFP49711 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CTCFP49711 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CTCFP49711 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
CTCFP49711 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
CTCFP49711 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
CTCFP49711 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC32.26■■■□□ 2.75
CTCFP49711 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CTCFP49711 AGPS-202ENST00000409888 815 ntTSL 4 BASIC32.25■■■□□ 2.75
CTCFP49711 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.24■■■□□ 2.75
CTCFP49711 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CTCFP49711 RPS2-209ENST00000529806 993 ntTSL 3 BASIC32.24■■■□□ 2.75
CTCFP49711 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CTCFP49711 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CTCFP49711 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CTCFP49711 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CTCFP49711 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.75
CTCFP49711 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC32.2■■■□□ 2.75
CTCFP49711 CR559946.2-201ENST00000623684 991 ntBASIC32.2■■■□□ 2.75
CTCFP49711 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC32.2■■■□□ 2.75
CTCFP49711 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CTCFP49711 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
CTCFP49711 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
CTCFP49711 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
CTCFP49711 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC32.18■■■□□ 2.74
CTCFP49711 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
CTCFP49711 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CTCFP49711 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CTCFP49711 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
CTCFP49711 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.74
CTCFP49711 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC32.14■■■□□ 2.74
CTCFP49711 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC32.14■■■□□ 2.74
CTCFP49711 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.12■■■□□ 2.73
CTCFP49711 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CTCFP49711 ABHD17AP5-201ENST00000580133 923 ntBASIC32.12■■■□□ 2.73
CTCFP49711 DUX4L11-201ENST00000611504 1267 ntBASIC32.12■■■□□ 2.73
CTCFP49711 DUX4L12-201ENST00000614593 1267 ntBASIC32.12■■■□□ 2.73
CTCFP49711 DUX4L14-201ENST00000621227 1267 ntBASIC32.12■■■□□ 2.73
CTCFP49711 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CTCFP49711 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC32.11■■■□□ 2.73
CTCFP49711 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.11■■■□□ 2.73
CTCFP49711 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
CTCFP49711 CIB2-204ENST00000557846 934 ntTSL 3 BASIC32.09■■■□□ 2.73
CTCFP49711 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
CTCFP49711 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.07■■■□□ 2.72
CTCFP49711 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC32.06■■■□□ 2.72
CTCFP49711 RARRES2P2-201ENST00000394842 485 ntBASIC32.06■■■□□ 2.72
CTCFP49711 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
CTCFP49711 LINC01971-201ENST00000617888 1048 ntBASIC32.03■■■□□ 2.72
CTCFP49711 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC32.02■■■□□ 2.72
CTCFP49711 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CTCFP49711 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.99■■■□□ 2.71
CTCFP49711 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.99■■■□□ 2.71
CTCFP49711 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.99■■■□□ 2.71
CTCFP49711 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
CTCFP49711 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CTCFP49711 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CTCFP49711 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.95■■■□□ 2.71
CTCFP49711 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.95■■■□□ 2.71
CTCFP49711 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
CTCFP49711 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CTCFP49711 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
CTCFP49711 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CTCFP49711 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CTCFP49711 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.89■■■□□ 2.7
CTCFP49711 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.88■■■□□ 2.69
CTCFP49711 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.88■■■□□ 2.69
CTCFP49711 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.86■■■□□ 2.69
CTCFP49711 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
CTCFP49711 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
CTCFP49711 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.85■■■□□ 2.69
CTCFP49711 METRNL-202ENST00000570778 967 ntTSL 5 BASIC31.83■■■□□ 2.69
CTCFP49711 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CTCFP49711 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
CTCFP49711 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CTCFP49711 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms