Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 AC004812.2-201ENST00000611079 2094 ntBASIC21.13■□□□□ 0.97
PCDHGA3Q9Y5H0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 LINC01529-204ENST00000636474 1715 ntBASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 AC144652.1-201ENST00000609974 1624 ntBASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHGA3Q9Y5H0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 KRT18P14-201ENST00000534205 1250 ntBASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 C9orf163-202ENST00000624034 2573 ntBASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA3Q9Y5H0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDHGA3Q9Y5H0 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDHGA3Q9Y5H0 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA3Q9Y5H0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA3Q9Y5H0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA3Q9Y5H0 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 NTF6G-201ENST00000591094 616 ntBASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 AL024507.2-201ENST00000606070 2574 ntBASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA3Q9Y5H0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDHGA3Q9Y5H0 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.08■□□□□ 0.96
PCDHGA3Q9Y5H0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHGA3Q9Y5H0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHGA3Q9Y5H0 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
PCDHGA3Q9Y5H0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDHGA3Q9Y5H0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.07■□□□□ 0.96
PCDHGA3Q9Y5H0 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHGA3Q9Y5H0 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms