Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 KRT87P-202ENST00000534226 1464 ntBASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.04■■□□□ 1.44
TRIM43Q96BQ3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 AC105036.2-201ENST00000569468 176 ntBASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 ITM2C-210ENST00000620962 501 ntBASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 OXCT2P1-201ENST00000447263 1535 ntBASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TRIM43Q96BQ3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 CNN2P6-201ENST00000439038 900 ntBASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 MYCNOS-205ENST00000641950 531 ntBASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRIM43Q96BQ3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 AC005224.4-201ENST00000583262 1652 ntBASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRIM43Q96BQ3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC24■■□□□ 1.43
TRIM43Q96BQ3 PRORSD1P-201ENST00000295112 541 ntBASIC24■■□□□ 1.43
TRIM43Q96BQ3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24■■□□□ 1.43
TRIM43Q96BQ3 AC133552.2-202ENST00000575694 574 ntBASIC24■■□□□ 1.43
TRIM43Q96BQ3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC24■■□□□ 1.43
TRIM43Q96BQ3 KRT18P29-201ENST00000397031 1267 ntBASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 AP003733.4-201ENST00000623785 1697 ntBASIC23.99■■□□□ 1.43
TRIM43Q96BQ3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.98■■□□□ 1.43
TRIM43Q96BQ3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC23.98■■□□□ 1.43
TRIM43Q96BQ3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TRIM43Q96BQ3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
TRIM43Q96BQ3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
TRIM43Q96BQ3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.98■■□□□ 1.43
TRIM43Q96BQ3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 AP001160.3-201ENST00000601484 763 ntBASIC23.97■■□□□ 1.43
TRIM43Q96BQ3 AC022211.4-201ENST00000625094 2161 ntBASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM43Q96BQ3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 RNA5SP413-201ENST00000516373 109 ntBASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRIM43Q96BQ3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TRIM43Q96BQ3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TRIM43Q96BQ3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TRIM43Q96BQ3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
TRIM43Q96BQ3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms