RNA–Protein interactions for RNA: ENST00000620962.1

ITM2C-210, Transcript of integral membrane protein 2C, humanhuman

BASIC

Gene ITM2C, Length 501 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2C-210ENST00000620962 NISCHQ9Y2I1 1504 aa50.66■■■■■ 5.7
ITM2C-210ENST00000620962 CCDC180Q9P1Z9 1646 aa45.58■■■■■ 4.89
ITM2C-210ENST00000620962 ABCC9O60706 1549 aa45.56■■■■■ 4.88
ITM2C-210ENST00000620962 RB1CC1Q8TDY2 1594 aa43.4■■■■■ 4.54
ITM2C-210ENST00000620962 NACADO15069 1562 aa43.1■■■■■ 4.49
ITM2C-210ENST00000620962 DNAJC5BQ9UF47 199 aa42.81■■■■■ 4.44
ITM2C-210ENST00000620962 DCAF8L2P0C7V8 631 aa42.64■■■■■ 4.42
ITM2C-210ENST00000620962 MYO15BQ96JP2 1530 aa42.51■■■■■ 4.4
ITM2C-210ENST00000620962 UNC13AQ9UPW8 1703 aa42.43■■■■■ 4.38
ITM2C-210ENST00000620962 PABPN1Q86U42 306 aaKnown RBP eCLIP42.34■■■■■ 4.37
ITM2C-210ENST00000620962 BICRAQ9NZM4 1560 aa42.13■■■■■ 4.33
ITM2C-210ENST00000620962 ZCCHC6Q5VYS8 1495 aaKnown RBP41.98■■■■■ 4.31
ITM2C-210ENST00000620962 DCAF1Q9Y4B6 1507 aa41.91■■■■■ 4.3
ITM2C-210ENST00000620962 SHROOM4Q9ULL8 1493 aa41.63■■■■■ 4.25
ITM2C-210ENST00000620962 SCRIBQ14160 1630 aa41.41■■■■■ 4.22
ITM2C-210ENST00000620962 CC2D2AQ9P2K1 1620 aa41.2■■■■■ 4.19
ITM2C-210ENST00000620962 EIF4G1Q04637 1599 aaKnown RBP41.1■■■■■ 4.17
ITM2C-210ENST00000620962 CECR2Q9BXF3 1484 aa41.09■■■■■ 4.17
ITM2C-210ENST00000620962 NCAPD3P42695 1498 aa39.77■■■■□ 3.96
ITM2C-210ENST00000620962 ATAD2BQ9ULI0 1458 aa39.61■■■■□ 3.93
ITM2C-210ENST00000620962 SMARCA4P51532 1647 aa39.55■■■■□ 3.92
ITM2C-210ENST00000620962 SMARCA2P51531 1590 aa39.52■■■■□ 3.92
ITM2C-210ENST00000620962 HMGXB3Q12766 1538 aa39.49■■■■□ 3.91
ITM2C-210ENST00000620962 DNAJC5Q9H3Z4 198 aa39.45■■■■□ 3.91
ITM2C-210ENST00000620962 CUX2O14529 1486 aa39.4■■■■□ 3.9
ITM2C-210ENST00000620962 ERCC6Q03468 1493 aa39.36■■■■□ 3.89
ITM2C-210ENST00000620962 BAZ1AQ9NRL2 1556 aaPredicted RBP39.34■■■■□ 3.89
ITM2C-210ENST00000620962 PEG3Q9GZU2 1588 aa39.22■■■■□ 3.87
ITM2C-210ENST00000620962 BAZ1BQ9UIG0 1483 aaKnown RBP39.2■■■■□ 3.87
ITM2C-210ENST00000620962 NESP48681 1621 aa39.11■■■■□ 3.85
ITM2C-210ENST00000620962 MROH2BQ7Z745 1585 aa39■■■■□ 3.83
ITM2C-210ENST00000620962 LAMC3Q9Y6N6 1575 aa38.91■■■■□ 3.82
ITM2C-210ENST00000620962 THOC2Q8NI27 1593 aaKnown RBP38.81■■■■□ 3.8
ITM2C-210ENST00000620962 KIF21AQ7Z4S6 1674 aa38.65■■■■□ 3.78
ITM2C-210ENST00000620962 PDS5BQ9NTI5 1447 aa38.64■■■■□ 3.78
ITM2C-210ENST00000620962 WIZO95785 1651 aa38.53■■■■□ 3.76
ITM2C-210ENST00000620962 CADPSQ9ULU8 1353 aa38.52■■■■□ 3.76
ITM2C-210ENST00000620962 MRC2Q9UBG0 1479 aa38.32■■■■□ 3.72
ITM2C-210ENST00000620962 WDR62O43379 1518 aa38.26■■■■□ 3.72
ITM2C-210ENST00000620962 RSF1Q96T23 1441 aaPredicted RBP38.15■■■■□ 3.7
ITM2C-210ENST00000620962 CEP164Q9UPV0 1460 aa38.15■■■■□ 3.7
ITM2C-210ENST00000620962 CFTRP13569 1480 aa38.09■■■■□ 3.69
ITM2C-210ENST00000620962 FANCD2Q9BXW9 1451 aa38.08■■■■□ 3.69
ITM2C-210ENST00000620962 TOP2AP11388 1531 aaKnown RBP38.07■■■■□ 3.69
ITM2C-210ENST00000620962 URB2Q14146 1524 aaKnown RBP37.77■■■■□ 3.64
ITM2C-210ENST00000620962 PRDM2Q13029 1718 aa37.76■■■■□ 3.64
ITM2C-210ENST00000620962 CCDC88BA6NC98 1476 aa37.6■■■■□ 3.61
ITM2C-210ENST00000620962 TRIM41Q8WV44 630 aa37.59■■■■□ 3.61
ITM2C-210ENST00000620962 OSCARQ8IYS5 282 aa37.51■■■■□ 3.6
ITM2C-210ENST00000620962 IFT140Q96RY7 1462 aa37.39■■■■□ 3.58
ITM2C-210ENST00000620962 TOPBP1Q92547 1522 aa37.36■■■■□ 3.57
ITM2C-210ENST00000620962 ABCC8Q09428 1581 aa37.31■■■■□ 3.56
ITM2C-210ENST00000620962 ZNF608Q9ULD9 1512 aaPredicted RBP37.3■■■■□ 3.56
ITM2C-210ENST00000620962 DNMBPQ6XZF7 1577 aa37.23■■■■□ 3.55
ITM2C-210ENST00000620962 EIF4G3O43432 1585 aaKnown RBP37.13■■■■□ 3.53
ITM2C-210ENST00000620962 RIMBP3CA6NJZ7 1639 aa37.07■■■■□ 3.53
ITM2C-210ENST00000620962 RIMBP3BA6NNM3 1639 aa37.07■■■■□ 3.53
ITM2C-210ENST00000620962 RIMBP3Q9UFD9 1639 aa37.07■■■■□ 3.53
ITM2C-210ENST00000620962 TARBP1Q13395 1621 aaKnown RBP37.06■■■■□ 3.52
ITM2C-210ENST00000620962 POLA1P09884 1462 aaPredicted RBP36.96■■■■□ 3.51
ITM2C-210ENST00000620962 ARHGEF11O15085 1522 aa36.95■■■■□ 3.5
ITM2C-210ENST00000620962 AQRO60306 1485 aaKnown RBP eCLIP36.94■■■■□ 3.5
ITM2C-210ENST00000620962 CHD1O14646 1710 aa36.88■■■■□ 3.49
ITM2C-210ENST00000620962 RAD54L2Q9Y4B4 1467 aa36.78■■■■□ 3.48
ITM2C-210ENST00000620962 SOGA1O94964 1423 aa36.77■■■■□ 3.48
ITM2C-210ENST00000620962 WDR97A6NE52 1622 aa36.74■■■■□ 3.47
ITM2C-210ENST00000620962 FGD5Q6ZNL6 1462 aa36.7■■■■□ 3.47
ITM2C-210ENST00000620962 TDRD9Q8NDG6 1382 aaKnown RBP36.68■■■■□ 3.46
ITM2C-210ENST00000620962 CUX1P39880 1505 aa36.66■■■■□ 3.46
ITM2C-210ENST00000620962 FBLN2P98095 1184 aa36.66■■■■□ 3.46
ITM2C-210ENST00000620962 CYB5RLQ6IPT4 315 aa36.6■■■■□ 3.45
ITM2C-210ENST00000620962 SNAPC4Q5SXM2 1469 aa36.58■■■■□ 3.45
ITM2C-210ENST00000620962 ARAP1Q96P48 1450 aa36.56■■■■□ 3.44
ITM2C-210ENST00000620962 MAGI1Q96QZ7 1491 aaPredicted RBP36.53■■■■□ 3.44
ITM2C-210ENST00000620962 GRIN2BQ13224 1484 aa36.5■■■■□ 3.43
ITM2C-210ENST00000620962 CLASP1Q7Z460 1538 aa36.48■■■■□ 3.43
ITM2C-210ENST00000620962 SYNJ1O43426 1573 aa36.44■■■■□ 3.42
ITM2C-210ENST00000620962 CHMP7Q8WUX9 453 aaPredicted RBP36.42■■■■□ 3.42
ITM2C-210ENST00000620962 SYNJ2O15056 1496 aa36.39■■■■□ 3.42
ITM2C-210ENST00000620962 PBRM1Q86U86 1689 aa36.37■■■■□ 3.41
ITM2C-210ENST00000620962 GAPVD1Q14C86 1478 aa36.34■■■■□ 3.41
ITM2C-210ENST00000620962 ABCA10Q8WWZ4 1543 aa36.32■■■■□ 3.4
ITM2C-210ENST00000620962 ABCA5Q8WWZ7 1642 aa36.28■■■■□ 3.4
ITM2C-210ENST00000620962 SUPT5HO00267 1087 aaKnown RBP36.26■■■■□ 3.4
ITM2C-210ENST00000620962 TRHP20396 242 aaPredicted RBP36.21■■■■□ 3.39
ITM2C-210ENST00000620962 WRNQ14191 1432 aaPredicted RBP eCLIP36.12■■■■□ 3.37
ITM2C-210ENST00000620962 BIVM-ERCC5R4GMW8 1640 aa36.09■■■■□ 3.37
ITM2C-210ENST00000620962 TOP2BQ02880 1626 aa36.07■■■■□ 3.36
ITM2C-210ENST00000620962 GRIN2AQ12879 1464 aa36.03■■■■□ 3.36
ITM2C-210ENST00000620962 ADAMTS12P58397 1594 aa36■■■■□ 3.35
ITM2C-210ENST00000620962 NUP160Q12769 1436 aa35.93■■■■□ 3.34
ITM2C-210ENST00000620962 CEP170Q5SW79 1584 aa35.89■■■■□ 3.34
ITM2C-210ENST00000620962 FHAD1B1AJZ9 1412 aa35.88■■■■□ 3.33
ITM2C-210ENST00000620962 ERICH3Q5RHP9 1530 aa35.88■■■■□ 3.33
ITM2C-210ENST00000620962 ERCC6L2Q5T890 1561 aa35.84■■■■□ 3.33
ITM2C-210ENST00000620962 SHROOM2Q13796 1616 aa35.8■■■■□ 3.32
ITM2C-210ENST00000620962 PRG4Q92954 1404 aaPredicted RBP35.54■■■■□ 3.28
ITM2C-210ENST00000620962 RUSC2Q8N2Y8 1516 aa35.51■■■■□ 3.27
ITM2C-210ENST00000620962 JPH4Q96JJ6 628 aa35.5■■■■□ 3.27
ITM2C-210ENST00000620962 KIF13AQ9H1H9 1805 aa35.36■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms