Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.86■□□□□ 0.61
ABCA4P78363 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ABCA4P78363 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
ABCA4P78363 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ABCA4P78363 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ABCA4P78363 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ABCA4P78363 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.86■□□□□ 0.61
ABCA4P78363 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ABCA4P78363 CD99P1-205ENST00000527459 561 ntBASIC18.85■□□□□ 0.61
ABCA4P78363 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.85■□□□□ 0.61
ABCA4P78363 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ABCA4P78363 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ABCA4P78363 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ABCA4P78363 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.85■□□□□ 0.61
ABCA4P78363 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ABCA4P78363 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ABCA4P78363 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ABCA4P78363 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.84■□□□□ 0.61
ABCA4P78363 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.84■□□□□ 0.61
ABCA4P78363 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.84■□□□□ 0.61
ABCA4P78363 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
ABCA4P78363 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
ABCA4P78363 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.84■□□□□ 0.61
ABCA4P78363 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.84■□□□□ 0.61
ABCA4P78363 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.84■□□□□ 0.61
ABCA4P78363 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ABCA4P78363 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ABCA4P78363 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
ABCA4P78363 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ABCA4P78363 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
ABCA4P78363 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.83■□□□□ 0.61
ABCA4P78363 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
ABCA4P78363 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ABCA4P78363 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
ABCA4P78363 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.83■□□□□ 0.61
ABCA4P78363 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.83■□□□□ 0.61
ABCA4P78363 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ABCA4P78363 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.83■□□□□ 0.6
ABCA4P78363 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC18.83■□□□□ 0.6
ABCA4P78363 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ABCA4P78363 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.83■□□□□ 0.6
ABCA4P78363 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ABCA4P78363 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.83■□□□□ 0.6
ABCA4P78363 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ABCA4P78363 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
ABCA4P78363 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.83■□□□□ 0.6
ABCA4P78363 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.83■□□□□ 0.6
ABCA4P78363 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ABCA4P78363 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.83■□□□□ 0.6
ABCA4P78363 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.83■□□□□ 0.6
ABCA4P78363 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ABCA4P78363 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ABCA4P78363 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ABCA4P78363 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ABCA4P78363 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.82■□□□□ 0.6
ABCA4P78363 SMUG1P1-201ENST00000590640 811 ntBASIC18.82■□□□□ 0.6
ABCA4P78363 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.82■□□□□ 0.6
ABCA4P78363 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
ABCA4P78363 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ABCA4P78363 AL353803.4-201ENST00000565882 1934 ntBASIC18.82■□□□□ 0.6
ABCA4P78363 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ABCA4P78363 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.81■□□□□ 0.6
ABCA4P78363 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
ABCA4P78363 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.81■□□□□ 0.6
ABCA4P78363 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.81■□□□□ 0.6
ABCA4P78363 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ABCA4P78363 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ABCA4P78363 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.81■□□□□ 0.6
ABCA4P78363 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.81■□□□□ 0.6
ABCA4P78363 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.81■□□□□ 0.6
ABCA4P78363 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.8■□□□□ 0.6
ABCA4P78363 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ABCA4P78363 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.8■□□□□ 0.6
ABCA4P78363 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.8■□□□□ 0.6
ABCA4P78363 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.8■□□□□ 0.6
ABCA4P78363 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.8■□□□□ 0.6
ABCA4P78363 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ABCA4P78363 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.8■□□□□ 0.6
ABCA4P78363 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA4P78363 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
ABCA4P78363 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA4P78363 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.79■□□□□ 0.6
ABCA4P78363 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.79■□□□□ 0.6
ABCA4P78363 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA4P78363 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA4P78363 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.79■□□□□ 0.6
ABCA4P78363 CNN2P6-201ENST00000439038 900 ntBASIC18.79■□□□□ 0.6
ABCA4P78363 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms