Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.3■□□□□ 0.68
MMP28Q9H239 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.3■□□□□ 0.68
MMP28Q9H239 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
MMP28Q9H239 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.29■□□□□ 0.68
MMP28Q9H239 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.29■□□□□ 0.68
MMP28Q9H239 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP28Q9H239 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
MMP28Q9H239 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MMP28Q9H239 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MMP28Q9H239 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP28Q9H239 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP28Q9H239 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
MMP28Q9H239 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.28■□□□□ 0.68
MMP28Q9H239 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP28Q9H239 RARRES2P1-201ENST00000474487 481 ntBASIC19.28■□□□□ 0.68
MMP28Q9H239 AC139795.1-202ENST00000500444 432 ntBASIC19.28■□□□□ 0.68
MMP28Q9H239 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.28■□□□□ 0.68
MMP28Q9H239 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP28Q9H239 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP28Q9H239 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.28■□□□□ 0.68
MMP28Q9H239 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP28Q9H239 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.27■□□□□ 0.68
MMP28Q9H239 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
MMP28Q9H239 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.27■□□□□ 0.68
MMP28Q9H239 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP28Q9H239 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.27■□□□□ 0.68
MMP28Q9H239 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
MMP28Q9H239 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.27■□□□□ 0.67
MMP28Q9H239 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
MMP28Q9H239 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP28Q9H239 FAM99A-202ENST00000538190 1989 ntBASIC19.26■□□□□ 0.67
MMP28Q9H239 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP28Q9H239 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP28Q9H239 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP28Q9H239 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.26■□□□□ 0.67
MMP28Q9H239 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP28Q9H239 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP28Q9H239 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
MMP28Q9H239 AC080038.3-201ENST00000623346 1952 ntBASIC19.26■□□□□ 0.67
MMP28Q9H239 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP28Q9H239 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP28Q9H239 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.25■□□□□ 0.67
MMP28Q9H239 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
MMP28Q9H239 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
MMP28Q9H239 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.25■□□□□ 0.67
MMP28Q9H239 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 AC079630.1-202ENST00000618127 1840 ntBASIC19.25■□□□□ 0.67
MMP28Q9H239 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP28Q9H239 AL157384.1-201ENST00000445995 2473 ntBASIC19.25■□□□□ 0.67
MMP28Q9H239 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.25■□□□□ 0.67
MMP28Q9H239 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP28Q9H239 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.24■□□□□ 0.67
MMP28Q9H239 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.24■□□□□ 0.67
MMP28Q9H239 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.24■□□□□ 0.67
MMP28Q9H239 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
MMP28Q9H239 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP28Q9H239 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP28Q9H239 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP28Q9H239 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
MMP28Q9H239 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.24■□□□□ 0.67
MMP28Q9H239 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP28Q9H239 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP28Q9H239 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP28Q9H239 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP28Q9H239 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP28Q9H239 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
MMP28Q9H239 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MMP28Q9H239 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP28Q9H239 BHLHE23-202ENST00000612929 1109 ntBASIC19.23■□□□□ 0.67
MMP28Q9H239 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.23■□□□□ 0.67
MMP28Q9H239 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP28Q9H239 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms