Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM1O15116 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM1O15116 KRT125P-201ENST00000546827 989 ntBASIC21.2■□□□□ 0.98
LSM1O15116 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
LSM1O15116 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM1O15116 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM1O15116 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
LSM1O15116 SLC25A24-204ENST00000569674 2357 ntBASIC21.19■□□□□ 0.98
LSM1O15116 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.19■□□□□ 0.98
LSM1O15116 AC009102.2-201ENST00000606772 1639 ntBASIC21.19■□□□□ 0.98
LSM1O15116 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LSM1O15116 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LSM1O15116 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.19■□□□□ 0.98
LSM1O15116 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LSM1O15116 AC009086.3-201ENST00000623486 1008 ntBASIC21.19■□□□□ 0.98
LSM1O15116 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LSM1O15116 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LSM1O15116 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
LSM1O15116 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LSM1O15116 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LSM1O15116 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LSM1O15116 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LSM1O15116 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LSM1O15116 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.18■□□□□ 0.98
LSM1O15116 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LSM1O15116 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LSM1O15116 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LSM1O15116 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LSM1O15116 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
LSM1O15116 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LSM1O15116 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LSM1O15116 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.17■□□□□ 0.98
LSM1O15116 MTDHP2-201ENST00000601468 714 ntBASIC21.17■□□□□ 0.98
LSM1O15116 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.17■□□□□ 0.98
LSM1O15116 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
LSM1O15116 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.17■□□□□ 0.98
LSM1O15116 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
LSM1O15116 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM1O15116 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM1O15116 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LSM1O15116 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM1O15116 LINC01960-201ENST00000563759 1884 ntBASIC21.16■□□□□ 0.98
LSM1O15116 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LSM1O15116 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM1O15116 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.16■□□□□ 0.98
LSM1O15116 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LSM1O15116 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LSM1O15116 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.16■□□□□ 0.98
LSM1O15116 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.16■□□□□ 0.98
LSM1O15116 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM1O15116 MIR4787-201ENST00000607364 84 ntBASIC21.16■□□□□ 0.98
LSM1O15116 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM1O15116 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.15■□□□□ 0.98
LSM1O15116 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.15■□□□□ 0.98
LSM1O15116 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LSM1O15116 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM1O15116 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.15■□□□□ 0.98
LSM1O15116 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
LSM1O15116 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
LSM1O15116 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
LSM1O15116 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LSM1O15116 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LSM1O15116 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.14■□□□□ 0.97
LSM1O15116 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.14■□□□□ 0.97
LSM1O15116 RARRES2P1-201ENST00000474487 481 ntBASIC21.14■□□□□ 0.97
LSM1O15116 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LSM1O15116 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LSM1O15116 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.14■□□□□ 0.97
LSM1O15116 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.14■□□□□ 0.97
LSM1O15116 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.14■□□□□ 0.97
LSM1O15116 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.14■□□□□ 0.97
LSM1O15116 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LSM1O15116 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LSM1O15116 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM1O15116 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM1O15116 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
LSM1O15116 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM1O15116 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.13■□□□□ 0.97
LSM1O15116 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 192 ms