Protein–RNA interactions for Protein: Q9H9S0

NANOG, Homeobox protein NANOG, humanhuman

Predictions only

Length 305 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NANOGQ9H9S0 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.91■□□□□ 0.94
NANOGQ9H9S0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
NANOGQ9H9S0 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NANOGQ9H9S0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.91■□□□□ 0.94
NANOGQ9H9S0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NANOGQ9H9S0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NANOGQ9H9S0 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
NANOGQ9H9S0 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NANOGQ9H9S0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
NANOGQ9H9S0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 SNX5-217ENST00000606557 1087 ntBASIC20.89■□□□□ 0.93
NANOGQ9H9S0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NANOGQ9H9S0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 AC004987.1-201ENST00000428627 508 ntBASIC20.88■□□□□ 0.93
NANOGQ9H9S0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 AC026310.3-201ENST00000625186 2373 ntBASIC20.88■□□□□ 0.93
NANOGQ9H9S0 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NANOGQ9H9S0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 ATP5G2P3-201ENST00000429083 425 ntBASIC20.87■□□□□ 0.93
NANOGQ9H9S0 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 AC010980.1-201ENST00000587192 1142 ntBASIC20.87■□□□□ 0.93
NANOGQ9H9S0 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 LINC01529-204ENST00000636474 1715 ntBASIC20.87■□□□□ 0.93
NANOGQ9H9S0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
NANOGQ9H9S0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NANOGQ9H9S0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NANOGQ9H9S0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 AC010542.4-201ENST00000563151 1910 ntBASIC20.84■□□□□ 0.93
NANOGQ9H9S0 FP325331.1-202ENST00000623531 1380 ntBASIC20.84■□□□□ 0.93
NANOGQ9H9S0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NANOGQ9H9S0 FAM99A-202ENST00000538190 1989 ntBASIC20.83■□□□□ 0.93
NANOGQ9H9S0 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NANOGQ9H9S0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NANOGQ9H9S0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.83■□□□□ 0.93
NANOGQ9H9S0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.83■□□□□ 0.93
NANOGQ9H9S0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NANOGQ9H9S0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
NANOGQ9H9S0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms