RNA–Protein interactions for RNA: ENST00000390654.7

COL23A1-201, Transcript of collagen type XXIII alpha 1 chain, humanhuman

APPRIS P2 TSL 5 BASIC

Gene COL23A1, Length 3,061 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL23A1-201ENST00000390654 NISCHQ9Y2I1 1504 aa42.07■■■■■ 4.33
COL23A1-201ENST00000390654 SHROOM4Q9ULL8 1493 aa37.02■■■■□ 3.52
COL23A1-201ENST00000390654 SUPT5HO00267 1087 aaKnown RBP36.45■■■■□ 3.43
COL23A1-201ENST00000390654 DCAF8L2P0C7V8 631 aa36.19■■■■□ 3.38
COL23A1-201ENST00000390654 ZCCHC6Q5VYS8 1495 aaKnown RBP35.5■■■■□ 3.27
COL23A1-201ENST00000390654 CCDC180Q9P1Z9 1646 aa35.25■■■■□ 3.23
COL23A1-201ENST00000390654 CHIC1Q5VXU3 224 aa35.22■■■■□ 3.23
COL23A1-201ENST00000390654 MYO15BQ96JP2 1530 aa35.18■■■■□ 3.22
COL23A1-201ENST00000390654 PCGF6Q9BYE7 350 aa34.86■■■■□ 3.17
COL23A1-201ENST00000390654 HRCP23327 699 aa34.75■■■■□ 3.15
COL23A1-201ENST00000390654 LOC105371045A0A1W2PR82 267 aa34.56■■■■□ 3.12
COL23A1-201ENST00000390654 PPARGC1BQ86YN6 1023 aaKnown RBP34.46■■■■□ 3.11
COL23A1-201ENST00000390654 DCAF1Q9Y4B6 1507 aa34.01■■■■□ 3.04
COL23A1-201ENST00000390654 EHMT2Q96KQ7 1210 aa33.89■■■■□ 3.02
COL23A1-201ENST00000390654 SCRIBQ14160 1630 aa33.86■■■■□ 3.01
COL23A1-201ENST00000390654 FAM9AQ8IZU1 332 aaPredicted RBP33.82■■■■□ 3
COL23A1-201ENST00000390654 TRIM26Q12899 539 aaPredicted RBP33.71■■■□□ 2.99
COL23A1-201ENST00000390654 ABCC9O60706 1549 aa33.65■■■□□ 2.98
COL23A1-201ENST00000390654 TRIM41Q8WV44 630 aa33.64■■■□□ 2.98
COL23A1-201ENST00000390654 RSF1Q96T23 1441 aaPredicted RBP33.54■■■□□ 2.96
COL23A1-201ENST00000390654 RB1CC1Q8TDY2 1594 aa33.28■■■□□ 2.92
COL23A1-201ENST00000390654 CECR2Q9BXF3 1484 aa33.2■■■□□ 2.91
COL23A1-201ENST00000390654 MROH2BQ7Z745 1585 aa32.94■■■□□ 2.86
COL23A1-201ENST00000390654 ZEB1P37275 1124 aaPredicted RBP32.92■■■□□ 2.86
COL23A1-201ENST00000390654 TTBK1Q5TCY1 1321 aaPredicted RBP32.8■■■□□ 2.84
COL23A1-201ENST00000390654 NACADO15069 1562 aa32.79■■■□□ 2.84
COL23A1-201ENST00000390654 WIZO95785 1651 aa32.76■■■□□ 2.84
COL23A1-201ENST00000390654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.69■■■□□ 2.82
COL23A1-201ENST00000390654 PABPN1Q86U42 306 aaKnown RBP eCLIP32.53■■■□□ 2.8
COL23A1-201ENST00000390654 CCER1Q8TC90 406 aaPredicted RBP32.51■■■□□ 2.79
COL23A1-201ENST00000390654 SCAF1Q9H7N4 1312 aaKnown RBP32.45■■■□□ 2.78
COL23A1-201ENST00000390654 ABCC8Q09428 1581 aa32.27■■■□□ 2.76
COL23A1-201ENST00000390654 BAZ1AQ9NRL2 1556 aaPredicted RBP32.24■■■□□ 2.75
COL23A1-201ENST00000390654 CCDC88BA6NC98 1476 aa32.2■■■□□ 2.75
COL23A1-201ENST00000390654 UBTFP17480 764 aaKnown RBP32.13■■■□□ 2.73
COL23A1-201ENST00000390654 SOGA1O94964 1423 aa32.09■■■□□ 2.73
COL23A1-201ENST00000390654 EIF4G1Q04637 1599 aaKnown RBP32.02■■■□□ 2.72
COL23A1-201ENST00000390654 CEP162Q5TB80 1403 aa32■■■□□ 2.71
COL23A1-201ENST00000390654 SMARCA4P51532 1647 aa31.99■■■□□ 2.71
COL23A1-201ENST00000390654 RANGAP1P46060 587 aaPredicted RBP31.98■■■□□ 2.71
COL23A1-201ENST00000390654 NEUROD1Q13562 356 aa31.98■■■□□ 2.71
COL23A1-201ENST00000390654 DIEXFQ68CQ4 756 aaKnown RBP31.98■■■□□ 2.71
COL23A1-201ENST00000390654 TOP2AP11388 1531 aaKnown RBP31.96■■■□□ 2.71
COL23A1-201ENST00000390654 RUSC2Q8N2Y8 1516 aa31.95■■■□□ 2.71
COL23A1-201ENST00000390654 CSRNP3Q8WYN3 585 aa31.91■■■□□ 2.7
COL23A1-201ENST00000390654 SMARCA2P51531 1590 aa31.88■■■□□ 2.69
COL23A1-201ENST00000390654 ACIN1Q9UKV3 1341 aaKnown RBP31.87■■■□□ 2.69
COL23A1-201ENST00000390654 UNC13AQ9UPW8 1703 aa31.86■■■□□ 2.69
COL23A1-201ENST00000390654 HNRNPUL2Q1KMD3 747 aaKnown RBP31.76■■■□□ 2.67
COL23A1-201ENST00000390654 TNIKQ9UKE5 1360 aa31.75■■■□□ 2.67
COL23A1-201ENST00000390654 WRNQ14191 1432 aaPredicted RBP eCLIP31.73■■■□□ 2.67
COL23A1-201ENST00000390654 GTF3C3Q9Y5Q9 886 aa31.72■■■□□ 2.67
COL23A1-201ENST00000390654 PELP1Q8IZL8 1130 aaKnown RBP31.69■■■□□ 2.66
COL23A1-201ENST00000390654 YTHDC1Q96MU7 727 aaKnown RBP31.66■■■□□ 2.66
COL23A1-201ENST00000390654 CENPBP07199 599 aaPredicted RBP31.59■■■□□ 2.65
COL23A1-201ENST00000390654 BICRAQ9NZM4 1560 aa31.55■■■□□ 2.64
COL23A1-201ENST00000390654 ZNF316A6NFI3 1004 aaPredicted RBP31.52■■■□□ 2.64
COL23A1-201ENST00000390654 GOLGA3Q08378 1498 aa31.5■■■□□ 2.63
COL23A1-201ENST00000390654 EEA1Q15075 1411 aa31.46■■■□□ 2.63
COL23A1-201ENST00000390654 APLP2Q06481 763 aa31.37■■■□□ 2.61
COL23A1-201ENST00000390654 CLIP1P30622 1438 aa31.33■■■□□ 2.61
COL23A1-201ENST00000390654 MIER1Q8N108 512 aa31.32■■■□□ 2.6
COL23A1-201ENST00000390654 BAZ1BQ9UIG0 1483 aaKnown RBP31.31■■■□□ 2.6
COL23A1-201ENST00000390654 SYNJ1O43426 1573 aa31.31■■■□□ 2.6
COL23A1-201ENST00000390654 ATAD2BQ9ULI0 1458 aa31.29■■■□□ 2.6
COL23A1-201ENST00000390654 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
COL23A1-201ENST00000390654 RAPGEF2Q9Y4G8 1499 aa31.2■■■□□ 2.58
COL23A1-201ENST00000390654 VPS8Q8N3P4 1428 aa31.1■■■□□ 2.57
COL23A1-201ENST00000390654 PEG3Q9GZU2 1588 aa31.02■■■□□ 2.56
COL23A1-201ENST00000390654 KIF21BO75037 1637 aa31■■■□□ 2.55
COL23A1-201ENST00000390654 KANK4Q5T7N3 995 aaPredicted RBP30.94■■■□□ 2.54
COL23A1-201ENST00000390654 ITGAEP38570 1179 aa30.93■■■□□ 2.54
COL23A1-201ENST00000390654 DHX57Q6P158 1386 aaKnown RBP30.72■■■□□ 2.51
COL23A1-201ENST00000390654 TOP2BQ02880 1626 aa30.68■■■□□ 2.5
COL23A1-201ENST00000390654 ARAP1Q96P48 1450 aa30.66■■■□□ 2.5
COL23A1-201ENST00000390654 ATP1B4Q9UN42 357 aaPredicted RBP30.62■■■□□ 2.49
COL23A1-201ENST00000390654 CUX1P39880 1505 aa30.59■■■□□ 2.49
COL23A1-201ENST00000390654 PRXQ9BXM0 1461 aa30.58■■■□□ 2.49
COL23A1-201ENST00000390654 P3H3Q8IVL6 736 aa30.58■■■□□ 2.49
COL23A1-201ENST00000390654 KIF27Q86VH2 1401 aa30.52■■■□□ 2.48
COL23A1-201ENST00000390654 NCAPD3P42695 1498 aa30.49■■■□□ 2.47
COL23A1-201ENST00000390654 CLSPNQ9HAW4 1339 aa30.42■■■□□ 2.46
COL23A1-201ENST00000390654 KCNH8Q96L42 1107 aa30.42■■■□□ 2.46
COL23A1-201ENST00000390654 BIVM-ERCC5R4GMW8 1640 aa30.42■■■□□ 2.46
COL23A1-201ENST00000390654 ERICH3Q5RHP9 1530 aa30.42■■■□□ 2.46
COL23A1-201ENST00000390654 CCNB3Q8WWL7 1395 aa30.42■■■□□ 2.46
COL23A1-201ENST00000390654 CUX2O14529 1486 aa30.39■■■□□ 2.46
COL23A1-201ENST00000390654 ARHGAP35Q9NRY4 1499 aa30.36■■■□□ 2.45
COL23A1-201ENST00000390654 CFTRP13569 1480 aa30.35■■■□□ 2.45
COL23A1-201ENST00000390654 RRBP1Q9P2E9 1410 aaKnown RBP30.34■■■□□ 2.45
COL23A1-201ENST00000390654 FAM50AQ14320 339 aaKnown RBP30.33■■■□□ 2.45
COL23A1-201ENST00000390654 SUPT16HQ9Y5B9 1047 aaKnown RBP30.33■■■□□ 2.45
COL23A1-201ENST00000390654 HMGXB3Q12766 1538 aa30.32■■■□□ 2.44
COL23A1-201ENST00000390654 SIN3AQ96ST3 1273 aa30.28■■■□□ 2.44
COL23A1-201ENST00000390654 RAB3GAP2Q9H2M9 1393 aa30.28■■■□□ 2.44
COL23A1-201ENST00000390654 HIRIP3Q9BW71 556 aaPredicted RBP30.27■■■□□ 2.44
COL23A1-201ENST00000390654 IGF1RP08069 1367 aa30.25■■■□□ 2.43
COL23A1-201ENST00000390654 CARMIL1Q5VZK9 1371 aa30.2■■■□□ 2.42
COL23A1-201ENST00000390654 DDX10Q13206 875 aaKnown RBP30.19■■■□□ 2.42
COL23A1-201ENST00000390654 BCANQ96GW7 911 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms