Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LRRC53A6NM62 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.83■■□□□ 1.4
LRRC53A6NM62 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
LRRC53A6NM62 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRRC53A6NM62 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
LRRC53A6NM62 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRRC53A6NM62 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRRC53A6NM62 C11orf96-202ENST00000528572 1834 ntBASIC23.82■■□□□ 1.4
LRRC53A6NM62 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
LRRC53A6NM62 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
LRRC53A6NM62 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRRC53A6NM62 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRRC53A6NM62 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
LRRC53A6NM62 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.81■■□□□ 1.4
LRRC53A6NM62 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
LRRC53A6NM62 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRRC53A6NM62 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
LRRC53A6NM62 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRRC53A6NM62 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
LRRC53A6NM62 DUX4L4-201ENST00000566884 1269 ntBASIC23.8■■□□□ 1.4
LRRC53A6NM62 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRRC53A6NM62 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.8■■□□□ 1.4
LRRC53A6NM62 AC009102.2-201ENST00000606772 1639 ntBASIC23.8■■□□□ 1.4
LRRC53A6NM62 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRRC53A6NM62 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
LRRC53A6NM62 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
LRRC53A6NM62 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.79■■□□□ 1.4
LRRC53A6NM62 KRT125P-201ENST00000546827 989 ntBASIC23.79■■□□□ 1.4
LRRC53A6NM62 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC53A6NM62 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.79■■□□□ 1.4
LRRC53A6NM62 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC53A6NM62 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC53A6NM62 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC53A6NM62 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC53A6NM62 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC53A6NM62 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 Z92544.1-202ENST00000571933 1220 ntBASIC23.78■■□□□ 1.4
LRRC53A6NM62 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
LRRC53A6NM62 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LRRC53A6NM62 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.78■■□□□ 1.4
LRRC53A6NM62 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.77■■□□□ 1.4
LRRC53A6NM62 MTDHP2-201ENST00000601468 714 ntBASIC23.77■■□□□ 1.4
LRRC53A6NM62 AC009086.3-201ENST00000623486 1008 ntBASIC23.77■■□□□ 1.4
LRRC53A6NM62 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
LRRC53A6NM62 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
LRRC53A6NM62 AC007375.3-201ENST00000600936 2314 ntBASIC23.77■■□□□ 1.4
LRRC53A6NM62 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC53A6NM62 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
LRRC53A6NM62 LINC01960-201ENST00000563759 1884 ntBASIC23.77■■□□□ 1.4
LRRC53A6NM62 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRRC53A6NM62 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRRC53A6NM62 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRC53A6NM62 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRRC53A6NM62 RARRES2P1-201ENST00000474487 481 ntBASIC23.76■■□□□ 1.39
LRRC53A6NM62 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 MIR4787-201ENST00000607364 84 ntBASIC23.76■■□□□ 1.39
LRRC53A6NM62 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
LRRC53A6NM62 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRRC53A6NM62 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC53A6NM62 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC53A6NM62 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC53A6NM62 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.75■■□□□ 1.39
LRRC53A6NM62 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
LRRC53A6NM62 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC53A6NM62 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC53A6NM62 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.75■■□□□ 1.39
LRRC53A6NM62 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
LRRC53A6NM62 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.75■■□□□ 1.39
LRRC53A6NM62 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LRRC53A6NM62 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
LRRC53A6NM62 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LRRC53A6NM62 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.74■■□□□ 1.39
LRRC53A6NM62 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.74■■□□□ 1.39
LRRC53A6NM62 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LRRC53A6NM62 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LRRC53A6NM62 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
LRRC53A6NM62 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.74■■□□□ 1.39
LRRC53A6NM62 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.74■■□□□ 1.39
LRRC53A6NM62 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LRRC53A6NM62 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LRRC53A6NM62 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms