Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.92■■□□□ 1.42
LRRC53A6NM62 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
LRRC53A6NM62 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.91■■□□□ 1.42
LRRC53A6NM62 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
LRRC53A6NM62 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC53A6NM62 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC53A6NM62 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.91■■□□□ 1.42
LRRC53A6NM62 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.91■■□□□ 1.42
LRRC53A6NM62 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC53A6NM62 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC53A6NM62 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC53A6NM62 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.91■■□□□ 1.42
LRRC53A6NM62 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
LRRC53A6NM62 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC53A6NM62 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.9■■□□□ 1.42
LRRC53A6NM62 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.9■■□□□ 1.42
LRRC53A6NM62 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.9■■□□□ 1.42
LRRC53A6NM62 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
LRRC53A6NM62 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC53A6NM62 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
LRRC53A6NM62 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
LRRC53A6NM62 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
LRRC53A6NM62 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.42
LRRC53A6NM62 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.89■■□□□ 1.42
LRRC53A6NM62 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
LRRC53A6NM62 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.89■■□□□ 1.41
LRRC53A6NM62 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.89■■□□□ 1.41
LRRC53A6NM62 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
LRRC53A6NM62 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
LRRC53A6NM62 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.41
LRRC53A6NM62 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
LRRC53A6NM62 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.88■■□□□ 1.41
LRRC53A6NM62 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
LRRC53A6NM62 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LRRC53A6NM62 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
LRRC53A6NM62 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
LRRC53A6NM62 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.87■■□□□ 1.41
LRRC53A6NM62 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LRRC53A6NM62 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LRRC53A6NM62 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LRRC53A6NM62 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
LRRC53A6NM62 FP325331.1-202ENST00000623531 1380 ntBASIC23.86■■□□□ 1.41
LRRC53A6NM62 AC092053.2-201ENST00000640557 1818 ntBASIC23.86■■□□□ 1.41
LRRC53A6NM62 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC53A6NM62 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.85■■□□□ 1.41
LRRC53A6NM62 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LRRC53A6NM62 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
LRRC53A6NM62 AC137767.1-201ENST00000602918 1920 ntBASIC23.85■■□□□ 1.41
LRRC53A6NM62 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.85■■□□□ 1.41
LRRC53A6NM62 AC092028.1-203ENST00000608262 953 ntBASIC23.85■■□□□ 1.41
LRRC53A6NM62 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LRRC53A6NM62 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LRRC53A6NM62 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.85■■□□□ 1.41
LRRC53A6NM62 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC53A6NM62 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
LRRC53A6NM62 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC53A6NM62 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.84■■□□□ 1.41
LRRC53A6NM62 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC53A6NM62 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC53A6NM62 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
LRRC53A6NM62 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC53A6NM62 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC53A6NM62 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LRRC53A6NM62 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LRRC53A6NM62 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.83■■□□□ 1.41
LRRC53A6NM62 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
LRRC53A6NM62 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.83■■□□□ 1.41
LRRC53A6NM62 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.83■■□□□ 1.41
LRRC53A6NM62 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms