Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC25.57■■□□□ 1.68
PCDHA1Q9Y5I3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.57■■□□□ 1.68
PCDHA1Q9Y5I3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.57■■□□□ 1.68
PCDHA1Q9Y5I3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA1Q9Y5I3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA1Q9Y5I3 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 AC010525.1-201ENST00000585559 441 ntBASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA1Q9Y5I3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA1Q9Y5I3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 AC092068.2-201ENST00000590491 1708 ntBASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 OR2I1P-207ENST00000453522 948 ntBASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 AC126544.1-201ENST00000580842 1059 ntBASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.52■■□□□ 1.68
PCDHA1Q9Y5I3 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA1Q9Y5I3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA1Q9Y5I3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PCDHA1Q9Y5I3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
PCDHA1Q9Y5I3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA1Q9Y5I3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.51■■□□□ 1.67
PCDHA1Q9Y5I3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA1Q9Y5I3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 AC004687.1-201ENST00000579003 1625 ntBASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA1Q9Y5I3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA1Q9Y5I3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms