Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC34.27■■■■□ 3.08
COL17A1Q9UMD9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC34.26■■■■□ 3.08
COL17A1Q9UMD9 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC34.26■■■■□ 3.08
COL17A1Q9UMD9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC34.26■■■■□ 3.08
COL17A1Q9UMD9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC34.26■■■■□ 3.08
COL17A1Q9UMD9 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
COL17A1Q9UMD9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
COL17A1Q9UMD9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC34.26■■■■□ 3.07
COL17A1Q9UMD9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
COL17A1Q9UMD9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC34.26■■■■□ 3.07
COL17A1Q9UMD9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC34.26■■■■□ 3.07
COL17A1Q9UMD9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC34.25■■■■□ 3.07
COL17A1Q9UMD9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC34.25■■■■□ 3.07
COL17A1Q9UMD9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC34.25■■■■□ 3.07
COL17A1Q9UMD9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC34.25■■■■□ 3.07
COL17A1Q9UMD9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
COL17A1Q9UMD9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC34.24■■■■□ 3.07
COL17A1Q9UMD9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC34.24■■■■□ 3.07
COL17A1Q9UMD9 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC34.24■■■■□ 3.07
COL17A1Q9UMD9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
COL17A1Q9UMD9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
COL17A1Q9UMD9 AC098590.1-201ENST00000468126 897 ntBASIC34.24■■■■□ 3.07
COL17A1Q9UMD9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
COL17A1Q9UMD9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC34.23■■■■□ 3.07
COL17A1Q9UMD9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC34.23■■■■□ 3.07
COL17A1Q9UMD9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
COL17A1Q9UMD9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC34.23■■■■□ 3.07
COL17A1Q9UMD9 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
COL17A1Q9UMD9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC34.22■■■■□ 3.07
COL17A1Q9UMD9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC34.21■■■■□ 3.07
COL17A1Q9UMD9 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC34.21■■■■□ 3.07
COL17A1Q9UMD9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC34.21■■■■□ 3.07
COL17A1Q9UMD9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
COL17A1Q9UMD9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC34.21■■■■□ 3.07
COL17A1Q9UMD9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
COL17A1Q9UMD9 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC34.2■■■■□ 3.07
COL17A1Q9UMD9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC34.2■■■■□ 3.07
COL17A1Q9UMD9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
COL17A1Q9UMD9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC34.2■■■■□ 3.06
COL17A1Q9UMD9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC34.2■■■■□ 3.06
COL17A1Q9UMD9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC34.2■■■■□ 3.06
COL17A1Q9UMD9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC34.2■■■■□ 3.06
COL17A1Q9UMD9 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC34.19■■■■□ 3.06
COL17A1Q9UMD9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC34.19■■■■□ 3.06
COL17A1Q9UMD9 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC34.19■■■■□ 3.06
COL17A1Q9UMD9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC34.19■■■■□ 3.06
COL17A1Q9UMD9 AC073210.2-201ENST00000430369 194 ntBASIC34.19■■■■□ 3.06
COL17A1Q9UMD9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
COL17A1Q9UMD9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC34.18■■■■□ 3.06
COL17A1Q9UMD9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
COL17A1Q9UMD9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC34.18■■■■□ 3.06
COL17A1Q9UMD9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC34.18■■■■□ 3.06
COL17A1Q9UMD9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
COL17A1Q9UMD9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
COL17A1Q9UMD9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 DUX4L16-201ENST00000555130 1264 ntBASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
COL17A1Q9UMD9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
COL17A1Q9UMD9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC34.15■■■■□ 3.06
COL17A1Q9UMD9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC34.15■■■■□ 3.06
COL17A1Q9UMD9 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
COL17A1Q9UMD9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC34.15■■■■□ 3.06
COL17A1Q9UMD9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC34.15■■■■□ 3.06
COL17A1Q9UMD9 AL596275.1-201ENST00000423464 877 ntBASIC34.14■■■■□ 3.06
COL17A1Q9UMD9 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
COL17A1Q9UMD9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC34.14■■■■□ 3.06
COL17A1Q9UMD9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC34.14■■■■□ 3.06
COL17A1Q9UMD9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC34.14■■■■□ 3.06
COL17A1Q9UMD9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC34.14■■■■□ 3.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms