Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
COL17A1Q9UMD9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC34.4■■■■□ 3.1
COL17A1Q9UMD9 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC34.4■■■■□ 3.1
COL17A1Q9UMD9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC34.4■■■■□ 3.1
COL17A1Q9UMD9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 DUX4L4-201ENST00000566884 1269 ntBASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 MFSD11-216ENST00000590393 1141 ntBASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 AL022069.1-201ENST00000568025 1636 ntBASIC34.39■■■■□ 3.1
COL17A1Q9UMD9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC34.38■■■■□ 3.09
COL17A1Q9UMD9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
COL17A1Q9UMD9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
COL17A1Q9UMD9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
COL17A1Q9UMD9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC34.38■■■■□ 3.09
COL17A1Q9UMD9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC34.37■■■■□ 3.09
COL17A1Q9UMD9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
COL17A1Q9UMD9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
COL17A1Q9UMD9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
COL17A1Q9UMD9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
COL17A1Q9UMD9 ERN1-208ENST00000606895 2068 ntBASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 AC098934.4-201ENST00000564127 592 ntBASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC34.35■■■■□ 3.09
COL17A1Q9UMD9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
COL17A1Q9UMD9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC34.34■■■■□ 3.09
COL17A1Q9UMD9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC34.34■■■■□ 3.09
COL17A1Q9UMD9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC34.34■■■■□ 3.09
COL17A1Q9UMD9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC34.34■■■■□ 3.09
COL17A1Q9UMD9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC34.34■■■■□ 3.09
COL17A1Q9UMD9 PRORSD1P-201ENST00000295112 541 ntBASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 KRT19P1-201ENST00000405746 1186 ntBASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 MDK-213ENST00000617138 635 ntTSL 2 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 ITM2C-210ENST00000620962 501 ntBASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC34.33■■■■□ 3.09
COL17A1Q9UMD9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC34.32■■■■□ 3.09
COL17A1Q9UMD9 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 RPS2P52-201ENST00000469610 820 ntBASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC34.32■■■■□ 3.08
COL17A1Q9UMD9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
COL17A1Q9UMD9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
COL17A1Q9UMD9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
COL17A1Q9UMD9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 POU5F1P3-201ENST00000428824 1078 ntBASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC34.29■■■■□ 3.08
COL17A1Q9UMD9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 KRT18P11-201ENST00000435214 1283 ntBASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC34.28■■■■□ 3.08
COL17A1Q9UMD9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms