Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TSPY26P-201ENST00000476365 1326 ntBASIC26.71■■□□□ 1.87
DDX4Q9NQI0 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
DDX4Q9NQI0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.7■■□□□ 1.86
DDX4Q9NQI0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.7■■□□□ 1.86
DDX4Q9NQI0 AC010525.1-201ENST00000585559 441 ntBASIC26.7■■□□□ 1.86
DDX4Q9NQI0 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.7■■□□□ 1.86
DDX4Q9NQI0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
DDX4Q9NQI0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
DDX4Q9NQI0 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
DDX4Q9NQI0 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC26.69■■□□□ 1.86
DDX4Q9NQI0 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
DDX4Q9NQI0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
DDX4Q9NQI0 DUX4L4-201ENST00000566884 1269 ntBASIC26.68■■□□□ 1.86
DDX4Q9NQI0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
DDX4Q9NQI0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.68■■□□□ 1.86
DDX4Q9NQI0 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX4Q9NQI0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX4Q9NQI0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 AL031602.1-201ENST00000633169 911 ntBASIC26.67■■□□□ 1.86
DDX4Q9NQI0 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
DDX4Q9NQI0 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
DDX4Q9NQI0 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 FP325331.1-202ENST00000623531 1380 ntBASIC26.65■■□□□ 1.86
DDX4Q9NQI0 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC26.65■■□□□ 1.86
DDX4Q9NQI0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
DDX4Q9NQI0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
DDX4Q9NQI0 AC144652.1-201ENST00000609974 1624 ntBASIC26.64■■□□□ 1.85
DDX4Q9NQI0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
DDX4Q9NQI0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 AK1-201ENST00000223836 736 ntTSL 3 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 IGHV3-19-201ENST00000521488 291 ntBASIC26.63■■□□□ 1.85
DDX4Q9NQI0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC26.63■■□□□ 1.85
DDX4Q9NQI0 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
DDX4Q9NQI0 LINC01124-201ENST00000409786 2117 ntBASIC26.62■■□□□ 1.85
DDX4Q9NQI0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC26.62■■□□□ 1.85
DDX4Q9NQI0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.62■■□□□ 1.85
DDX4Q9NQI0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC26.62■■□□□ 1.85
DDX4Q9NQI0 AC004812.2-201ENST00000611079 2094 ntBASIC26.62■■□□□ 1.85
DDX4Q9NQI0 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
DDX4Q9NQI0 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.62■■□□□ 1.85
DDX4Q9NQI0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.61■■□□□ 1.85
DDX4Q9NQI0 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
DDX4Q9NQI0 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
DDX4Q9NQI0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms