Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 AL031848.2-201ENST00000607670 837 ntBASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RHBDD3Q9Y3P4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.61■□□□□ 0.73
RHBDD3Q9Y3P4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 C1orf229-201ENST00000623686 2258 ntBASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RHBDD3Q9Y3P4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 ALDH1A3-203ENST00000557963 1670 ntBASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RHBDD3Q9Y3P4 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RHBDD3Q9Y3P4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
RHBDD3Q9Y3P4 CLDN5-201ENST00000403084 2357 ntBASIC19.58■□□□□ 0.73
RHBDD3Q9Y3P4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
RHBDD3Q9Y3P4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RHBDD3Q9Y3P4 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RHBDD3Q9Y3P4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 EP400NL-214ENST00000641289 2402 ntBASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RHBDD3Q9Y3P4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 AC004448.1-201ENST00000458332 883 ntBASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
RHBDD3Q9Y3P4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RHBDD3Q9Y3P4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 AC137630.3-201ENST00000607245 391 ntBASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RHBDD3Q9Y3P4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms