Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 AL136162.1-201ENST00000607711 1078 ntBASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHA1Q9Y5I3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 AC106739.1-201ENST00000617035 715 ntBASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 AC241377.3-202ENST00000626088 1088 ntBASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 AC241585.3-202ENST00000628937 1088 ntBASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 AC245100.8-202ENST00000629247 1058 ntBASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 SYT6-210ENST00000641643 1587 ntBASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 ABCB10P4-201ENST00000566803 2184 ntBASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA1Q9Y5I3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.96■■□□□ 1.75
PCDHA1Q9Y5I3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
PCDHA1Q9Y5I3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHA1Q9Y5I3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHA1Q9Y5I3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHA1Q9Y5I3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHA1Q9Y5I3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA1Q9Y5I3 AC135279.3-201ENST00000610945 1311 ntBASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 AC024257.2-201ENST00000549699 147 ntBASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 AC133561.4-201ENST00000566112 224 ntBASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHA1Q9Y5I3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 AC006455.2-201ENST00000429931 906 ntBASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 AC005837.3-201ENST00000612163 286 ntBASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA1Q9Y5I3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 SERBP1P1-201ENST00000396021 1160 ntBASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.92■■□□□ 1.74
PCDHA1Q9Y5I3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA1Q9Y5I3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.91■■□□□ 1.74
PCDHA1Q9Y5I3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.91■■□□□ 1.74
PCDHA1Q9Y5I3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA1Q9Y5I3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 AC009086.3-201ENST00000623486 1008 ntBASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.9■■□□□ 1.74
PCDHA1Q9Y5I3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHA1Q9Y5I3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.89■■□□□ 1.74
PCDHA1Q9Y5I3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHA1Q9Y5I3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.89■■□□□ 1.74
PCDHA1Q9Y5I3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.89■■□□□ 1.74
PCDHA1Q9Y5I3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
PCDHA1Q9Y5I3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHA1Q9Y5I3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHA1Q9Y5I3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHA1Q9Y5I3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.88■■□□□ 1.73
PCDHA1Q9Y5I3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.88■■□□□ 1.73
PCDHA1Q9Y5I3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms