Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HIPK3Q9H422 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.93■■□□□ 1.58
HIPK3Q9H422 IGHV3-19-201ENST00000521488 291 ntBASIC24.93■■□□□ 1.58
HIPK3Q9H422 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HIPK3Q9H422 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HIPK3Q9H422 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HIPK3Q9H422 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
HIPK3Q9H422 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
HIPK3Q9H422 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
HIPK3Q9H422 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
HIPK3Q9H422 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
HIPK3Q9H422 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
HIPK3Q9H422 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
HIPK3Q9H422 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
HIPK3Q9H422 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC24.91■■□□□ 1.58
HIPK3Q9H422 MIR572-201ENST00000384983 95 ntBASIC24.91■■□□□ 1.58
HIPK3Q9H422 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.91■■□□□ 1.58
HIPK3Q9H422 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.91■■□□□ 1.58
HIPK3Q9H422 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
HIPK3Q9H422 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
HIPK3Q9H422 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.9■■□□□ 1.58
HIPK3Q9H422 ID1-201ENST00000376105 1233 ntBASIC24.9■■□□□ 1.58
HIPK3Q9H422 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.9■■□□□ 1.58
HIPK3Q9H422 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
HIPK3Q9H422 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.9■■□□□ 1.58
HIPK3Q9H422 AC012414.1-201ENST00000556676 535 ntBASIC24.9■■□□□ 1.58
HIPK3Q9H422 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HIPK3Q9H422 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
HIPK3Q9H422 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.89■■□□□ 1.58
HIPK3Q9H422 AC141586.4-201ENST00000624558 1573 ntBASIC24.89■■□□□ 1.58
HIPK3Q9H422 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.89■■□□□ 1.58
HIPK3Q9H422 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.58
HIPK3Q9H422 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.89■■□□□ 1.58
HIPK3Q9H422 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.89■■□□□ 1.58
HIPK3Q9H422 CCDC92B-201ENST00000575506 885 ntBASIC24.89■■□□□ 1.58
HIPK3Q9H422 AL354811.1-201ENST00000610286 706 ntBASIC24.89■■□□□ 1.58
HIPK3Q9H422 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.89■■□□□ 1.58
HIPK3Q9H422 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
HIPK3Q9H422 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.89■■□□□ 1.57
HIPK3Q9H422 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.88■■□□□ 1.57
HIPK3Q9H422 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.88■■□□□ 1.57
HIPK3Q9H422 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.88■■□□□ 1.57
HIPK3Q9H422 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.88■■□□□ 1.57
HIPK3Q9H422 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
HIPK3Q9H422 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
HIPK3Q9H422 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HIPK3Q9H422 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HIPK3Q9H422 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.87■■□□□ 1.57
HIPK3Q9H422 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.87■■□□□ 1.57
HIPK3Q9H422 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
HIPK3Q9H422 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.87■■□□□ 1.57
HIPK3Q9H422 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
HIPK3Q9H422 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
HIPK3Q9H422 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.86■■□□□ 1.57
HIPK3Q9H422 AL161729.1-201ENST00000604104 1402 ntBASIC24.86■■□□□ 1.57
HIPK3Q9H422 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
HIPK3Q9H422 NTF6G-201ENST00000591094 616 ntBASIC24.86■■□□□ 1.57
HIPK3Q9H422 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
HIPK3Q9H422 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
HIPK3Q9H422 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.86■■□□□ 1.57
HIPK3Q9H422 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.86■■□□□ 1.57
HIPK3Q9H422 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HIPK3Q9H422 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HIPK3Q9H422 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.85■■□□□ 1.57
HIPK3Q9H422 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.85■■□□□ 1.57
HIPK3Q9H422 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
HIPK3Q9H422 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.85■■□□□ 1.57
HIPK3Q9H422 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HIPK3Q9H422 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.84■■□□□ 1.57
HIPK3Q9H422 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
HIPK3Q9H422 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.84■■□□□ 1.57
HIPK3Q9H422 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HIPK3Q9H422 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.84■■□□□ 1.57
HIPK3Q9H422 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.84■■□□□ 1.57
HIPK3Q9H422 VPS53-216ENST00000574029 585 ntTSL 4 BASIC24.84■■□□□ 1.57
HIPK3Q9H422 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.84■■□□□ 1.57
HIPK3Q9H422 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
HIPK3Q9H422 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.84■■□□□ 1.57
HIPK3Q9H422 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HIPK3Q9H422 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
HIPK3Q9H422 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
HIPK3Q9H422 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
HIPK3Q9H422 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
HIPK3Q9H422 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
HIPK3Q9H422 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.83■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms