Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP28Q9H239 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MMP28Q9H239 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP28Q9H239 ANOS2P-203ENST00000472227 1816 ntBASIC19.8■□□□□ 0.76
MMP28Q9H239 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.8■□□□□ 0.76
MMP28Q9H239 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP28Q9H239 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MMP28Q9H239 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.8■□□□□ 0.76
MMP28Q9H239 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP28Q9H239 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP28Q9H239 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
MMP28Q9H239 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP28Q9H239 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP28Q9H239 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP28Q9H239 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.79■□□□□ 0.76
MMP28Q9H239 AC007029.1-201ENST00000604183 313 ntBASIC19.79■□□□□ 0.76
MMP28Q9H239 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP28Q9H239 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
MMP28Q9H239 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP28Q9H239 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.79■□□□□ 0.76
MMP28Q9H239 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 HLA-L-211ENST00000482052 1765 ntBASIC19.78■□□□□ 0.76
MMP28Q9H239 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 RP9P-202ENST00000450133 1212 ntBASIC19.78■□□□□ 0.76
MMP28Q9H239 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
MMP28Q9H239 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP28Q9H239 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
MMP28Q9H239 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP28Q9H239 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
MMP28Q9H239 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP28Q9H239 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.77■□□□□ 0.76
MMP28Q9H239 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP28Q9H239 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP28Q9H239 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP28Q9H239 MIR6089-201ENST00000616698 64 ntBASIC19.77■□□□□ 0.76
MMP28Q9H239 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.77■□□□□ 0.76
MMP28Q9H239 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
MMP28Q9H239 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.77■□□□□ 0.75
MMP28Q9H239 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
MMP28Q9H239 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
MMP28Q9H239 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
MMP28Q9H239 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.76■□□□□ 0.75
MMP28Q9H239 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MMP28Q9H239 AC073130.3-201ENST00000624389 2278 ntBASIC19.76■□□□□ 0.75
MMP28Q9H239 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
MMP28Q9H239 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
MMP28Q9H239 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MMP28Q9H239 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.75■□□□□ 0.75
MMP28Q9H239 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
MMP28Q9H239 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.74■□□□□ 0.75
MMP28Q9H239 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MMP28Q9H239 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.74■□□□□ 0.75
MMP28Q9H239 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
MMP28Q9H239 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.74■□□□□ 0.75
MMP28Q9H239 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
MMP28Q9H239 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MMP28Q9H239 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
MMP28Q9H239 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.74■□□□□ 0.75
MMP28Q9H239 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
MMP28Q9H239 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MMP28Q9H239 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 AC093536.1-201ENST00000569153 554 ntBASIC19.73■□□□□ 0.75
MMP28Q9H239 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.73■□□□□ 0.75
MMP28Q9H239 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms