RNA–Protein interactions for RNA: ENST00000359518.7

TRIM3-202, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TRIM3, Length 3,042 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-202ENST00000359518 NISCHQ9Y2I1 1504 aa41.72■■■■■ 4.27
TRIM3-202ENST00000359518 SHROOM4Q9ULL8 1493 aa36.49■■■■□ 3.43
TRIM3-202ENST00000359518 SUPT5HO00267 1087 aaKnown RBP35.97■■■■□ 3.35
TRIM3-202ENST00000359518 DCAF8L2P0C7V8 631 aa35.3■■■■□ 3.24
TRIM3-202ENST00000359518 ZCCHC6Q5VYS8 1495 aaKnown RBP35.29■■■■□ 3.24
TRIM3-202ENST00000359518 CCDC180Q9P1Z9 1646 aa34.98■■■■□ 3.19
TRIM3-202ENST00000359518 CHIC1Q5VXU3 224 aa34.86■■■■□ 3.17
TRIM3-202ENST00000359518 MYO15BQ96JP2 1530 aa34.8■■■■□ 3.16
TRIM3-202ENST00000359518 PCGF6Q9BYE7 350 aa34.39■■■■□ 3.1
TRIM3-202ENST00000359518 HRCP23327 699 aa34.37■■■■□ 3.09
TRIM3-202ENST00000359518 LOC105371045A0A1W2PR82 267 aa34.11■■■■□ 3.05
TRIM3-202ENST00000359518 PPARGC1BQ86YN6 1023 aaKnown RBP33.94■■■■□ 3.02
TRIM3-202ENST00000359518 DCAF1Q9Y4B6 1507 aa33.91■■■■□ 3.02
TRIM3-202ENST00000359518 TRIM26Q12899 539 aaPredicted RBP33.36■■■□□ 2.93
TRIM3-202ENST00000359518 SCRIBQ14160 1630 aa33.35■■■□□ 2.93
TRIM3-202ENST00000359518 ABCC9O60706 1549 aa33.33■■■□□ 2.93
TRIM3-202ENST00000359518 FAM9AQ8IZU1 332 aaPredicted RBP33.33■■■□□ 2.93
TRIM3-202ENST00000359518 EHMT2Q96KQ7 1210 aa33.28■■■□□ 2.92
TRIM3-202ENST00000359518 RSF1Q96T23 1441 aaPredicted RBP33.28■■■□□ 2.92
TRIM3-202ENST00000359518 TRIM41Q8WV44 630 aa33.28■■■□□ 2.92
TRIM3-202ENST00000359518 RB1CC1Q8TDY2 1594 aa33.01■■■□□ 2.87
TRIM3-202ENST00000359518 CECR2Q9BXF3 1484 aa32.77■■■□□ 2.84
TRIM3-202ENST00000359518 ZEB1P37275 1124 aaPredicted RBP32.64■■■□□ 2.81
TRIM3-202ENST00000359518 MROH2BQ7Z745 1585 aa32.6■■■□□ 2.81
TRIM3-202ENST00000359518 WIZO95785 1651 aa32.43■■■□□ 2.78
TRIM3-202ENST00000359518 NACADO15069 1562 aa32.4■■■□□ 2.78
TRIM3-202ENST00000359518 TTBK1Q5TCY1 1321 aaPredicted RBP32.25■■■□□ 2.75
TRIM3-202ENST00000359518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.25■■■□□ 2.75
TRIM3-202ENST00000359518 CCER1Q8TC90 406 aaPredicted RBP32.1■■■□□ 2.73
TRIM3-202ENST00000359518 BAZ1AQ9NRL2 1556 aaPredicted RBP32.03■■■□□ 2.72
TRIM3-202ENST00000359518 SCAF1Q9H7N4 1312 aaKnown RBP32.01■■■□□ 2.72
TRIM3-202ENST00000359518 ABCC8Q09428 1581 aa31.97■■■□□ 2.71
TRIM3-202ENST00000359518 CCDC88BA6NC98 1476 aa31.91■■■□□ 2.7
TRIM3-202ENST00000359518 EIF4G1Q04637 1599 aaKnown RBP31.87■■■□□ 2.69
TRIM3-202ENST00000359518 SOGA1O94964 1423 aa31.78■■■□□ 2.68
TRIM3-202ENST00000359518 UBTFP17480 764 aaKnown RBP31.75■■■□□ 2.67
TRIM3-202ENST00000359518 TOP2AP11388 1531 aaKnown RBP31.73■■■□□ 2.67
TRIM3-202ENST00000359518 CEP162Q5TB80 1403 aa31.71■■■□□ 2.67
TRIM3-202ENST00000359518 SMARCA4P51532 1647 aa31.67■■■□□ 2.66
TRIM3-202ENST00000359518 SMARCA2P51531 1590 aa31.64■■■□□ 2.66
TRIM3-202ENST00000359518 PABPN1Q86U42 306 aaKnown RBP eCLIP31.64■■■□□ 2.66
TRIM3-202ENST00000359518 RUSC2Q8N2Y8 1516 aa31.63■■■□□ 2.65
TRIM3-202ENST00000359518 CSRNP3Q8WYN3 585 aa31.62■■■□□ 2.65
TRIM3-202ENST00000359518 DIEXFQ68CQ4 756 aaKnown RBP31.6■■■□□ 2.65
TRIM3-202ENST00000359518 NEUROD1Q13562 356 aa31.55■■■□□ 2.64
TRIM3-202ENST00000359518 WRNQ14191 1432 aaPredicted RBP eCLIP31.53■■■□□ 2.64
TRIM3-202ENST00000359518 TNIKQ9UKE5 1360 aa31.52■■■□□ 2.64
TRIM3-202ENST00000359518 ACIN1Q9UKV3 1341 aaKnown RBP31.5■■■□□ 2.63
TRIM3-202ENST00000359518 UNC13AQ9UPW8 1703 aa31.42■■■□□ 2.62
TRIM3-202ENST00000359518 PELP1Q8IZL8 1130 aaKnown RBP31.4■■■□□ 2.62
TRIM3-202ENST00000359518 RANGAP1P46060 587 aaPredicted RBP31.35■■■□□ 2.61
TRIM3-202ENST00000359518 HNRNPUL2Q1KMD3 747 aaKnown RBP31.34■■■□□ 2.61
TRIM3-202ENST00000359518 EEA1Q15075 1411 aa31.3■■■□□ 2.6
TRIM3-202ENST00000359518 GTF3C3Q9Y5Q9 886 aa31.29■■■□□ 2.6
TRIM3-202ENST00000359518 GOLGA3Q08378 1498 aa31.27■■■□□ 2.6
TRIM3-202ENST00000359518 CENPBP07199 599 aaPredicted RBP31.24■■■□□ 2.59
TRIM3-202ENST00000359518 ZNF316A6NFI3 1004 aaPredicted RBP31.18■■■□□ 2.58
TRIM3-202ENST00000359518 YTHDC1Q96MU7 727 aaKnown RBP31.16■■■□□ 2.58
TRIM3-202ENST00000359518 SYNJ1O43426 1573 aa31.06■■■□□ 2.56
TRIM3-202ENST00000359518 BICRAQ9NZM4 1560 aa31.06■■■□□ 2.56
TRIM3-202ENST00000359518 CLIP1P30622 1438 aa31.06■■■□□ 2.56
TRIM3-202ENST00000359518 APLP2Q06481 763 aa31.03■■■□□ 2.56
TRIM3-202ENST00000359518 CEP164Q9UPV0 1460 aa31.03■■■□□ 2.56
TRIM3-202ENST00000359518 MIER1Q8N108 512 aa30.92■■■□□ 2.54
TRIM3-202ENST00000359518 RAPGEF2Q9Y4G8 1499 aa30.92■■■□□ 2.54
TRIM3-202ENST00000359518 ATAD2BQ9ULI0 1458 aa30.87■■■□□ 2.53
TRIM3-202ENST00000359518 VPS8Q8N3P4 1428 aa30.86■■■□□ 2.53
TRIM3-202ENST00000359518 BAZ1BQ9UIG0 1483 aaKnown RBP30.84■■■□□ 2.53
TRIM3-202ENST00000359518 KIF21BO75037 1637 aa30.84■■■□□ 2.53
TRIM3-202ENST00000359518 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
TRIM3-202ENST00000359518 KANK4Q5T7N3 995 aaPredicted RBP30.6■■■□□ 2.49
TRIM3-202ENST00000359518 TOP2BQ02880 1626 aa30.5■■■□□ 2.47
TRIM3-202ENST00000359518 ITGAEP38570 1179 aa30.48■■■□□ 2.47
TRIM3-202ENST00000359518 DHX57Q6P158 1386 aaKnown RBP30.43■■■□□ 2.46
TRIM3-202ENST00000359518 ARAP1Q96P48 1450 aa30.41■■■□□ 2.46
TRIM3-202ENST00000359518 PRXQ9BXM0 1461 aa30.39■■■□□ 2.45
TRIM3-202ENST00000359518 BIVM-ERCC5R4GMW8 1640 aa30.29■■■□□ 2.44
TRIM3-202ENST00000359518 CUX1P39880 1505 aa30.27■■■□□ 2.44
TRIM3-202ENST00000359518 ERICH3Q5RHP9 1530 aa30.27■■■□□ 2.44
TRIM3-202ENST00000359518 KIF27Q86VH2 1401 aa30.25■■■□□ 2.43
TRIM3-202ENST00000359518 CLSPNQ9HAW4 1339 aa30.24■■■□□ 2.43
TRIM3-202ENST00000359518 CCNB3Q8WWL7 1395 aa30.15■■■□□ 2.42
TRIM3-202ENST00000359518 RRBP1Q9P2E9 1410 aaKnown RBP30.13■■■□□ 2.41
TRIM3-202ENST00000359518 ARHGAP35Q9NRY4 1499 aa30.12■■■□□ 2.41
TRIM3-202ENST00000359518 NCAPD3P42695 1498 aa30.09■■■□□ 2.41
TRIM3-202ENST00000359518 ATP1B4Q9UN42 357 aaPredicted RBP30.04■■■□□ 2.4
TRIM3-202ENST00000359518 P3H3Q8IVL6 736 aa30.02■■■□□ 2.4
TRIM3-202ENST00000359518 CFTRP13569 1480 aa30■■■□□ 2.39
TRIM3-202ENST00000359518 KCNH8Q96L42 1107 aa29.99■■■□□ 2.39
TRIM3-202ENST00000359518 CUX2O14529 1486 aa29.99■■■□□ 2.39
TRIM3-202ENST00000359518 HMGXB3Q12766 1538 aa29.99■■■□□ 2.39
TRIM3-202ENST00000359518 RAB3GAP2Q9H2M9 1393 aa29.98■■■□□ 2.39
TRIM3-202ENST00000359518 FAM50AQ14320 339 aaKnown RBP29.97■■■□□ 2.39
TRIM3-202ENST00000359518 SUPT16HQ9Y5B9 1047 aaKnown RBP29.97■■■□□ 2.39
TRIM3-202ENST00000359518 IGF1RP08069 1367 aa29.95■■■□□ 2.39
TRIM3-202ENST00000359518 SIN3AQ96ST3 1273 aa29.9■■■□□ 2.38
TRIM3-202ENST00000359518 CARMIL1Q5VZK9 1371 aa29.86■■■□□ 2.37
TRIM3-202ENST00000359518 DDX10Q13206 875 aaKnown RBP29.81■■■□□ 2.36
TRIM3-202ENST00000359518 HIRIP3Q9BW71 556 aaPredicted RBP29.81■■■□□ 2.36
TRIM3-202ENST00000359518 PHLDB1Q86UU1 1377 aa29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms