Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SRP54P61011 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.28■■□□□ 1.16
SRP54P61011 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.28■■□□□ 1.16
SRP54P61011 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SRP54P61011 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SRP54P61011 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SRP54P61011 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SRP54P61011 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SRP54P61011 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SRP54P61011 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.27■■□□□ 1.16
SRP54P61011 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.27■■□□□ 1.15
SRP54P61011 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SRP54P61011 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SRP54P61011 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.26■■□□□ 1.15
SRP54P61011 MIR4767-201ENST00000582827 78 ntBASIC22.26■■□□□ 1.15
SRP54P61011 AL138724.1-201ENST00000606771 1088 ntBASIC22.26■■□□□ 1.15
SRP54P61011 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.26■■□□□ 1.15
SRP54P61011 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SRP54P61011 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SRP54P61011 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SRP54P61011 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.26■■□□□ 1.15
SRP54P61011 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.26■■□□□ 1.15
SRP54P61011 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
SRP54P61011 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SRP54P61011 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SRP54P61011 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SRP54P61011 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SRP54P61011 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.25■■□□□ 1.15
SRP54P61011 AC009086.3-201ENST00000623486 1008 ntBASIC22.25■■□□□ 1.15
SRP54P61011 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.25■■□□□ 1.15
SRP54P61011 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
SRP54P61011 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SRP54P61011 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.25■■□□□ 1.15
SRP54P61011 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SRP54P61011 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.24■■□□□ 1.15
SRP54P61011 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.24■■□□□ 1.15
SRP54P61011 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
SRP54P61011 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 AC006455.2-201ENST00000429931 906 ntBASIC22.24■■□□□ 1.15
SRP54P61011 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 AC011298.3-201ENST00000615796 283 ntBASIC22.24■■□□□ 1.15
SRP54P61011 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SRP54P61011 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.23■■□□□ 1.15
SRP54P61011 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SRP54P61011 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SRP54P61011 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SRP54P61011 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.23■■□□□ 1.15
SRP54P61011 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.23■■□□□ 1.15
SRP54P61011 AF213884.3-201ENST00000563833 479 ntBASIC22.23■■□□□ 1.15
SRP54P61011 AL136967.2-201ENST00000623968 743 ntBASIC22.23■■□□□ 1.15
SRP54P61011 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SRP54P61011 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.22■■□□□ 1.15
SRP54P61011 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
SRP54P61011 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.22■■□□□ 1.15
SRP54P61011 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.22■■□□□ 1.15
SRP54P61011 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
SRP54P61011 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SRP54P61011 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
SRP54P61011 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SRP54P61011 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SRP54P61011 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SRP54P61011 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
SRP54P61011 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.21■■□□□ 1.15
SRP54P61011 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.21■■□□□ 1.15
SRP54P61011 ZNRF2P3-201ENST00000424200 374 ntBASIC22.21■■□□□ 1.15
SRP54P61011 AP001330.3-201ENST00000520123 633 ntBASIC22.21■■□□□ 1.15
SRP54P61011 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.21■■□□□ 1.15
SRP54P61011 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
SRP54P61011 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.21■■□□□ 1.15
SRP54P61011 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.15
SRP54P61011 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
SRP54P61011 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SRP54P61011 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.2■■□□□ 1.14
SRP54P61011 MIR939-201ENST00000401314 82 ntBASIC22.2■■□□□ 1.14
SRP54P61011 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SRP54P61011 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.2■■□□□ 1.14
SRP54P61011 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SRP54P61011 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SRP54P61011 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SRP54P61011 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SRP54P61011 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SRP54P61011 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SRP54P61011 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
SRP54P61011 MIR3181-201ENST00000578512 73 ntBASIC22.19■■□□□ 1.14
SRP54P61011 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SRP54P61011 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SRP54P61011 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.19■■□□□ 1.14
SRP54P61011 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.19■■□□□ 1.14
SRP54P61011 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
SRP54P61011 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.19■■□□□ 1.14
SRP54P61011 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SRP54P61011 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SRP54P61011 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SRP54P61011 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SRP54P61011 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SRP54P61011 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms