Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH1Q08174 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH1Q08174 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
PCDH1Q08174 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH1Q08174 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDH1Q08174 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDH1Q08174 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH1Q08174 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH1Q08174 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH1Q08174 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH1Q08174 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH1Q08174 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
PCDH1Q08174 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDH1Q08174 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH1Q08174 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH1Q08174 BX664725.1-201ENST00000438252 379 ntBASIC21.86■■□□□ 1.09
PCDH1Q08174 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.86■■□□□ 1.09
PCDH1Q08174 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH1Q08174 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH1Q08174 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH1Q08174 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDH1Q08174 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.85■■□□□ 1.09
PCDH1Q08174 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
PCDH1Q08174 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.85■■□□□ 1.09
PCDH1Q08174 RARRES2P1-201ENST00000474487 481 ntBASIC21.85■■□□□ 1.09
PCDH1Q08174 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH1Q08174 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
PCDH1Q08174 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH1Q08174 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.85■■□□□ 1.09
PCDH1Q08174 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDH1Q08174 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH1Q08174 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH1Q08174 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH1Q08174 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH1Q08174 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH1Q08174 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH1Q08174 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
PCDH1Q08174 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDH1Q08174 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
PCDH1Q08174 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH1Q08174 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH1Q08174 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH1Q08174 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
PCDH1Q08174 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH1Q08174 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.83■■□□□ 1.09
PCDH1Q08174 DUSP8P3-201ENST00000399571 1760 ntBASIC21.83■■□□□ 1.09
PCDH1Q08174 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH1Q08174 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.83■■□□□ 1.08
PCDH1Q08174 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.83■■□□□ 1.08
PCDH1Q08174 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PCDH1Q08174 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDH1Q08174 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDH1Q08174 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.82■■□□□ 1.08
PCDH1Q08174 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PCDH1Q08174 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDH1Q08174 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDH1Q08174 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PCDH1Q08174 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDH1Q08174 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PCDH1Q08174 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PCDH1Q08174 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDH1Q08174 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDH1Q08174 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDH1Q08174 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH1Q08174 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
PCDH1Q08174 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
PCDH1Q08174 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.81■■□□□ 1.08
PCDH1Q08174 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDH1Q08174 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDH1Q08174 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDH1Q08174 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDH1Q08174 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH1Q08174 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH1Q08174 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PCDH1Q08174 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH1Q08174 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH1Q08174 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH1Q08174 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH1Q08174 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDH1Q08174 AC092028.1-203ENST00000608262 953 ntBASIC21.8■■□□□ 1.08
PCDH1Q08174 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH1Q08174 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH1Q08174 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH1Q08174 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms