Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SHANK2-205ENST00000412252 1376 ntTSL 510.87□□□□□ -0.671e-6■■□□□ 13.8
CDC40O60508 SHANK2-208ENST00000426687 460 ntTSL 58.2□□□□□ -1.11e-6■■□□□ 13.8
CDC40O60508 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.488e-12■■□□□ 13.7
CDC40O60508 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.198e-12■■□□□ 13.7
CDC40O60508 TCTEX1D2-203ENST00000446494 800 ntTSL 316.17■□□□□ 0.188e-12■■□□□ 13.7
CDC40O60508 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.598e-12■■□□□ 13.7
CDC40O60508 TCTEX1D2-202ENST00000426563 603 ntTSL 27.23□□□□□ -1.258e-12■■□□□ 13.7
CDC40O60508 NPAS2-202ENST00000427413 625 ntTSL 36.86□□□□□ -1.312e-8■■□□□ 13.7
CDC40O60508 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.29□□□□□ -1.562e-8■■□□□ 13.7
CDC40O60508 NECAB3-211ENST00000485399 1373 ntTSL 219.79■□□□□ 0.766e-7■■□□□ 13.7
CDC40O60508 NECAB3-222ENST00000607805 969 ntTSL 519.55■□□□□ 0.726e-7■■□□□ 13.7
CDC40O60508 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.51■□□□□ 0.556e-7■■□□□ 13.7
CDC40O60508 NECAB3-213ENST00000488489 2142 ntTSL 218.37■□□□□ 0.536e-7■■□□□ 13.7
CDC40O60508 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.396e-7■■□□□ 13.7
CDC40O60508 NECAB3-219ENST00000606690 900 ntTSL 513.41□□□□□ -0.266e-7■■□□□ 13.7
CDC40O60508 NECAB3-203ENST00000439478 925 ntTSL 513.41□□□□□ -0.266e-7■■□□□ 13.7
CDC40O60508 ASGR2-206ENST00000576487 1055 ntTSL 1 (best)14.38□□□□□ -0.113e-12■■□□□ 13.7
CDC40O60508 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC12.11□□□□□ -0.471e-6■■□□□ 13.7
CDC40O60508 MTSS1-205ENST00000518547 4944 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.71e-6■■□□□ 13.7
CDC40O60508 MTSS1-202ENST00000378017 4458 ntTSL 1 (best) BASIC9.63□□□□□ -0.871e-6■■□□□ 13.7
CDC40O60508 MTSS1-212ENST00000522162 553 ntTSL 45.78□□□□□ -1.481e-6■■□□□ 13.7
CDC40O60508 BPTF-208ENST00000544778 7573 ntTSL 520.21■□□□□ 0.832e-6■■□□□ 13.7
CDC40O60508 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.792e-6■■□□□ 13.7
CDC40O60508 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.68■□□□□ 0.582e-6■■□□□ 13.7
CDC40O60508 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.44■□□□□ 0.382e-6■■□□□ 13.7
CDC40O60508 MYC-204ENST00000520751 577 ntTSL 317.4■□□□□ 0.382e-6■■□□□ 13.7
CDC40O60508 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.34■□□□□ 0.372e-6■■□□□ 13.7
CDC40O60508 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.362e-6■■□□□ 13.7
CDC40O60508 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.272e-6■■□□□ 13.7
CDC40O60508 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.69■□□□□ 0.262e-6■■□□□ 13.7
CDC40O60508 BHMT2-203ENST00000518758 528 ntTSL 216.33■□□□□ 0.22e-6■■□□□ 13.7
CDC40O60508 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.94■□□□□ 0.142e-6■■□□□ 13.7
CDC40O60508 BHMT2-204ENST00000519743 578 ntTSL 515.76■□□□□ 0.112e-6■■□□□ 13.7
CDC40O60508 PPIF-204ENST00000492149 646 ntTSL 215.7■□□□□ 0.12e-6■■□□□ 13.7
CDC40O60508 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.092e-6■■□□□ 13.7
CDC40O60508 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.082e-6■■□□□ 13.7
CDC40O60508 HAGLR-201ENST00000413969 545 ntTSL 315.5■□□□□ 0.072e-6■■□□□ 13.7
CDC40O60508 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.14■□□□□ 0.012e-6■■□□□ 13.7
CDC40O60508 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.052e-6■■□□□ 13.7
CDC40O60508 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.052e-6■■□□□ 13.7
CDC40O60508 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.16□□□□□ -0.142e-6■■□□□ 13.7
CDC40O60508 HAGLR-203ENST00000417086 984 ntTSL 213.96□□□□□ -0.172e-6■■□□□ 13.7
CDC40O60508 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.84□□□□□ -0.192e-6■■□□□ 13.7
CDC40O60508 MYC-203ENST00000517291 1023 ntTSL 1 (best)13.42□□□□□ -0.262e-6■■□□□ 13.7
CDC40O60508 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.262e-6■■□□□ 13.7
CDC40O60508 MST1P2-201ENST00000457982 2291 ntBASIC13.18□□□□□ -0.32e-6■■□□□ 13.7
CDC40O60508 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.372e-6■■□□□ 13.7
CDC40O60508 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.422e-6■■□□□ 13.7
CDC40O60508 BHMT2-207ENST00000523472 702 ntTSL 312.17□□□□□ -0.462e-6■■□□□ 13.7
CDC40O60508 HAGLR-205ENST00000436126 945 ntTSL 411.87□□□□□ -0.512e-6■■□□□ 13.7
CDC40O60508 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.542e-6■■□□□ 13.7
CDC40O60508 BHMT2-201ENST00000255192 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.562e-6■■□□□ 13.7
CDC40O60508 PRRC2C-208ENST00000476522 1931 ntTSL 511.06□□□□□ -0.642e-6■■□□□ 13.7
CDC40O60508 BHMT2-202ENST00000518666 524 ntTSL 510.44□□□□□ -0.742e-6■■□□□ 13.7
CDC40O60508 MBD4-208ENST00000509828 576 ntTSL 29.78□□□□□ -0.842e-6■■□□□ 13.7
CDC40O60508 ITPR2-203ENST00000451599 2577 ntTSL 1 (best)9.11□□□□□ -0.952e-6■■□□□ 13.7
CDC40O60508 PRRC2C-206ENST00000467601 717 ntTSL 28.59□□□□□ -1.032e-6■■□□□ 13.7
CDC40O60508 PRRC2C-203ENST00000392078 1919 ntTSL 1 (best) BASIC8.58□□□□□ -1.042e-6■■□□□ 13.7
CDC40O60508 BPTF-203ENST00000335221 2627 ntTSL 5 BASIC8.1□□□□□ -1.112e-6■■□□□ 13.7
CDC40O60508 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC7.74□□□□□ -1.172e-6■■□□□ 13.7
CDC40O60508 HELZ-206ENST00000579953 6365 ntTSL 26.47□□□□□ -1.372e-6■■□□□ 13.7
CDC40O60508 TPR-208ENST00000492973 453 ntTSL 26.13□□□□□ -1.432e-6■■□□□ 13.7
CDC40O60508 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.432e-6■■□□□ 13.7
CDC40O60508 PRRC2C-205ENST00000463586 3771 ntTSL 26.08□□□□□ -1.442e-6■■□□□ 13.7
CDC40O60508 NAP1L4-215ENST00000528363 685 ntTSL 25.84□□□□□ -1.472e-6■■□□□ 13.7
CDC40O60508 NAP1L4-208ENST00000483643 690 ntTSL 25.84□□□□□ -1.472e-6■■□□□ 13.7
CDC40O60508 BPTF-205ENST00000424123 8295 ntAPPRIS ALT2 TSL 1 (best)5.3□□□□□ -1.562e-6■■□□□ 13.7
CDC40O60508 BPTF-212ENST00000579173 770 ntTSL 24.92□□□□□ -1.622e-6■■□□□ 13.7
CDC40O60508 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.49□□□□□ -1.852e-6■■□□□ 13.7
CDC40O60508 BPTF-206ENST00000467104 550 ntTSL 21.75□□□□□ -2.132e-6■■□□□ 13.7
CDC40O60508 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.047e-7■■□□□ 13.7
CDC40O60508 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.377e-7■■□□□ 13.7
CDC40O60508 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC12.12□□□□□ -0.477e-7■■□□□ 13.7
CDC40O60508 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.677e-7■■□□□ 13.7
CDC40O60508 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.824e-6■■□□□ 13.7
CDC40O60508 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.261e-6■■□□□ 13.7
CDC40O60508 PPM1G-202ENST00000472077 3752 ntTSL 28.4□□□□□ -1.071e-6■■□□□ 13.7
CDC40O60508 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.91□□□□□ -0.021e-6■■□□□ 13.6
CDC40O60508 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.01□□□□□ -0.171e-6■■□□□ 13.6
CDC40O60508 MDM2-204ENST00000311420 1583 ntTSL 59.99□□□□□ -0.811e-6■■□□□ 13.6
CDC40O60508 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.111e-6■■□□□ 13.6
CDC40O60508 MDM2-213ENST00000393417 1683 ntTSL 57.1□□□□□ -1.271e-6■■□□□ 13.6
CDC40O60508 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.71e-6■■□□□ 13.6
CDC40O60508 GREB1-210ENST00000628795 438 ntTSL 54.36□□□□□ -1.712e-9■■□□□ 13.6
CDC40O60508 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.345e-6■■□□□ 13.5
CDC40O60508 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.045e-6■■□□□ 13.5
CDC40O60508 WDR6-216ENST00000489684 1155 ntTSL 215.05■□□□□ -01e-9■■□□□ 13.5
CDC40O60508 WDR6-211ENST00000471162 3565 ntTSL 1 (best)11.34□□□□□ -0.591e-9■■□□□ 13.5
CDC40O60508 WDR6-204ENST00000420783 3656 ntTSL 1 (best)11.08□□□□□ -0.641e-9■■□□□ 13.5
CDC40O60508 WDR6-207ENST00000448293 3377 ntTSL 2 BASIC10.46□□□□□ -0.731e-9■■□□□ 13.5
CDC40O60508 EXOC3L4-206ENST00000560304 657 ntTSL 319.36■□□□□ 0.691e-6■■□□□ 13.5
CDC40O60508 EXOC3L4-204ENST00000559693 813 ntTSL 316.02■□□□□ 0.161e-6■■□□□ 13.5
CDC40O60508 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.562e-9■■□□□ 13.5
CDC40O60508 ULK1-204ENST00000540647 1211 ntTSL 218.31■□□□□ 0.522e-9■■□□□ 13.5
CDC40O60508 TMC6-210ENST00000588792 843 ntTSL 216.71■□□□□ 0.272e-9■■□□□ 13.5
CDC40O60508 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.262e-9■■□□□ 13.5
CDC40O60508 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.232e-9■■□□□ 13.5
CDC40O60508 TMC6-211ENST00000589271 1099 ntTSL 515.62■□□□□ 0.092e-9■■□□□ 13.5
CDC40O60508 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.052e-9■■□□□ 13.5
CDC40O60508 TMC6-205ENST00000586126 821 ntTSL 315.22■□□□□ 0.032e-9■■□□□ 13.5
Retrieved 100 of 5,364 protein–RNA pairs in 253.6 ms