RNA–Protein interactions for RNA: ENST00000429544.6

MBD4-203, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD4, Length 2,478 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-203ENST00000429544 NISCHQ9Y2I1 1504 aa35.21■■■■□ 3.23
MBD4-203ENST00000429544 CCDC180Q9P1Z9 1646 aa30.34■■■□□ 2.45
MBD4-203ENST00000429544 ZCCHC6Q5VYS8 1495 aaKnown RBP29.7■■■□□ 2.35
MBD4-203ENST00000429544 SHROOM4Q9ULL8 1493 aa29.43■■■□□ 2.3
MBD4-203ENST00000429544 DCAF8L2P0C7V8 631 aa29.09■■■□□ 2.25
MBD4-203ENST00000429544 DCAF1Q9Y4B6 1507 aa28.98■■■□□ 2.23
MBD4-203ENST00000429544 SUPT5HO00267 1087 aaKnown RBP28.58■■■□□ 2.17
MBD4-203ENST00000429544 MYO15BQ96JP2 1530 aa28.36■■■□□ 2.13
MBD4-203ENST00000429544 ABCC9O60706 1549 aa28.33■■■□□ 2.13
MBD4-203ENST00000429544 SCRIBQ14160 1630 aa28.19■■■□□ 2.1
MBD4-203ENST00000429544 NACADO15069 1562 aa28.1■■■□□ 2.09
MBD4-203ENST00000429544 RB1CC1Q8TDY2 1594 aa27.76■■■□□ 2.03
MBD4-203ENST00000429544 CHIC1Q5VXU3 224 aa27.59■■■□□ 2.01
MBD4-203ENST00000429544 RSF1Q96T23 1441 aaPredicted RBP27.59■■■□□ 2.01
MBD4-203ENST00000429544 CECR2Q9BXF3 1484 aa27.41■■□□□ 1.98
MBD4-203ENST00000429544 UNC13AQ9UPW8 1703 aa27.36■■□□□ 1.97
MBD4-203ENST00000429544 MROH2BQ7Z745 1585 aa27.3■■□□□ 1.96
MBD4-203ENST00000429544 WIZO95785 1651 aa27.16■■□□□ 1.94
MBD4-203ENST00000429544 BAZ1AQ9NRL2 1556 aaPredicted RBP27.12■■□□□ 1.93
MBD4-203ENST00000429544 BICRAQ9NZM4 1560 aa26.98■■□□□ 1.91
MBD4-203ENST00000429544 SMARCA4P51532 1647 aa26.96■■□□□ 1.91
MBD4-203ENST00000429544 PABPN1Q86U42 306 aaKnown RBP eCLIP26.88■■□□□ 1.89
MBD4-203ENST00000429544 TOP2AP11388 1531 aaKnown RBP26.78■■□□□ 1.88
MBD4-203ENST00000429544 TRIM41Q8WV44 630 aa26.72■■□□□ 1.87
MBD4-203ENST00000429544 LOC105371045A0A1W2PR82 267 aa26.67■■□□□ 1.86
MBD4-203ENST00000429544 EIF4G1Q04637 1599 aaKnown RBP26.63■■□□□ 1.85
MBD4-203ENST00000429544 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
MBD4-203ENST00000429544 CCDC88BA6NC98 1476 aa26.57■■□□□ 1.84
MBD4-203ENST00000429544 PEG3Q9GZU2 1588 aa26.51■■□□□ 1.83
MBD4-203ENST00000429544 FAM9AQ8IZU1 332 aaPredicted RBP26.4■■□□□ 1.82
MBD4-203ENST00000429544 ATAD2BQ9ULI0 1458 aa26.34■■□□□ 1.81
MBD4-203ENST00000429544 ABCC8Q09428 1581 aa26.31■■□□□ 1.8
MBD4-203ENST00000429544 BAZ1BQ9UIG0 1483 aaKnown RBP26.25■■□□□ 1.79
MBD4-203ENST00000429544 EHMT2Q96KQ7 1210 aa26.13■■□□□ 1.77
MBD4-203ENST00000429544 PCGF6Q9BYE7 350 aa26.11■■□□□ 1.77
MBD4-203ENST00000429544 HMGXB3Q12766 1538 aa25.97■■□□□ 1.75
MBD4-203ENST00000429544 WRNQ14191 1432 aaPredicted RBP eCLIP25.95■■□□□ 1.74
MBD4-203ENST00000429544 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
MBD4-203ENST00000429544 SOGA1O94964 1423 aa25.91■■□□□ 1.74
MBD4-203ENST00000429544 SYNJ1O43426 1573 aa25.88■■□□□ 1.73
MBD4-203ENST00000429544 TRIM26Q12899 539 aaPredicted RBP25.83■■□□□ 1.73
MBD4-203ENST00000429544 RUSC2Q8N2Y8 1516 aa25.81■■□□□ 1.72
MBD4-203ENST00000429544 EEA1Q15075 1411 aa25.81■■□□□ 1.72
MBD4-203ENST00000429544 HRCP23327 699 aa25.8■■□□□ 1.72
MBD4-203ENST00000429544 CSRNP3Q8WYN3 585 aa25.71■■□□□ 1.71
MBD4-203ENST00000429544 TOP2BQ02880 1626 aa25.65■■□□□ 1.7
MBD4-203ENST00000429544 BIVM-ERCC5R4GMW8 1640 aa25.61■■□□□ 1.69
MBD4-203ENST00000429544 TNIKQ9UKE5 1360 aa25.59■■□□□ 1.69
MBD4-203ENST00000429544 CC2D2AQ9P2K1 1620 aa25.59■■□□□ 1.69
MBD4-203ENST00000429544 CEP162Q5TB80 1403 aa25.58■■□□□ 1.69
MBD4-203ENST00000429544 GOLGA3Q08378 1498 aa25.58■■□□□ 1.69
MBD4-203ENST00000429544 CFTRP13569 1480 aa25.57■■□□□ 1.68
MBD4-203ENST00000429544 PRDM2Q13029 1718 aa25.53■■□□□ 1.68
MBD4-203ENST00000429544 KIF21BO75037 1637 aa25.52■■□□□ 1.68
MBD4-203ENST00000429544 UBTFP17480 764 aaKnown RBP25.52■■□□□ 1.68
MBD4-203ENST00000429544 CEP164Q9UPV0 1460 aa25.5■■□□□ 1.67
MBD4-203ENST00000429544 CUX1P39880 1505 aa25.48■■□□□ 1.67
MBD4-203ENST00000429544 PPARGC1BQ86YN6 1023 aaKnown RBP25.46■■□□□ 1.67
MBD4-203ENST00000429544 CADPSQ9ULU8 1353 aa25.37■■□□□ 1.65
MBD4-203ENST00000429544 RAPGEF2Q9Y4G8 1499 aa25.33■■□□□ 1.65
MBD4-203ENST00000429544 CLIP1P30622 1438 aa25.22■■□□□ 1.63
MBD4-203ENST00000429544 KIF27Q86VH2 1401 aa25.21■■□□□ 1.63
MBD4-203ENST00000429544 ERICH3Q5RHP9 1530 aa25.2■■□□□ 1.62
MBD4-203ENST00000429544 PRXQ9BXM0 1461 aa25.2■■□□□ 1.62
MBD4-203ENST00000429544 TTBK1Q5TCY1 1321 aaPredicted RBP25.17■■□□□ 1.62
MBD4-203ENST00000429544 FANCD2Q9BXW9 1451 aa25.14■■□□□ 1.62
MBD4-203ENST00000429544 FGD5Q6ZNL6 1462 aa25.1■■□□□ 1.61
MBD4-203ENST00000429544 NESP48681 1621 aa25.08■■□□□ 1.61
MBD4-203ENST00000429544 RANGAP1P46060 587 aaPredicted RBP25.07■■□□□ 1.6
MBD4-203ENST00000429544 CUX2O14529 1486 aa25.07■■□□□ 1.6
MBD4-203ENST00000429544 VPS8Q8N3P4 1428 aa25.07■■□□□ 1.6
MBD4-203ENST00000429544 ZEB1P37275 1124 aaPredicted RBP25.05■■□□□ 1.6
MBD4-203ENST00000429544 DNMBPQ6XZF7 1577 aa25■■□□□ 1.59
MBD4-203ENST00000429544 LAMC3Q9Y6N6 1575 aa24.98■■□□□ 1.59
MBD4-203ENST00000429544 TOPBP1Q92547 1522 aa24.94■■□□□ 1.58
MBD4-203ENST00000429544 IGF1RP08069 1367 aa24.94■■□□□ 1.58
MBD4-203ENST00000429544 ARAP1Q96P48 1450 aa24.91■■□□□ 1.58
MBD4-203ENST00000429544 DNAJC5BQ9UF47 199 aa24.88■■□□□ 1.57
MBD4-203ENST00000429544 POLA1P09884 1462 aaPredicted RBP24.87■■□□□ 1.57
MBD4-203ENST00000429544 RAD54L2Q9Y4B4 1467 aa24.86■■□□□ 1.57
MBD4-203ENST00000429544 APLP2Q06481 763 aa24.86■■□□□ 1.57
MBD4-203ENST00000429544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.85■■□□□ 1.57
MBD4-203ENST00000429544 CARMIL1Q5VZK9 1371 aa24.83■■□□□ 1.57
MBD4-203ENST00000429544 ABCA10Q8WWZ4 1543 aa24.83■■□□□ 1.56
MBD4-203ENST00000429544 URB2Q14146 1524 aaKnown RBP24.81■■□□□ 1.56
MBD4-203ENST00000429544 ARHGAP35Q9NRY4 1499 aa24.78■■□□□ 1.56
MBD4-203ENST00000429544 CCER1Q8TC90 406 aaPredicted RBP24.77■■□□□ 1.56
MBD4-203ENST00000429544 PDS5BQ9NTI5 1447 aa24.77■■□□□ 1.56
MBD4-203ENST00000429544 KIF21AQ7Z4S6 1674 aa24.77■■□□□ 1.56
MBD4-203ENST00000429544 WDR97A6NE52 1622 aa24.73■■□□□ 1.55
MBD4-203ENST00000429544 CUL7Q14999 1698 aa24.67■■□□□ 1.54
MBD4-203ENST00000429544 HNRNPUL2Q1KMD3 747 aaKnown RBP24.6■■□□□ 1.53
MBD4-203ENST00000429544 ABCA5Q8WWZ7 1642 aa24.6■■□□□ 1.53
MBD4-203ENST00000429544 KANK4Q5T7N3 995 aaPredicted RBP24.58■■□□□ 1.53
MBD4-203ENST00000429544 CTTNBP2Q8WZ74 1663 aa24.56■■□□□ 1.52
MBD4-203ENST00000429544 TDRD9Q8NDG6 1382 aaKnown RBP24.55■■□□□ 1.52
MBD4-203ENST00000429544 GAPVD1Q14C86 1478 aa24.52■■□□□ 1.52
MBD4-203ENST00000429544 TARBP1Q13395 1621 aaKnown RBP24.51■■□□□ 1.51
MBD4-203ENST00000429544 TIAM1Q13009 1591 aa24.46■■□□□ 1.51
MBD4-203ENST00000429544 MRC2Q9UBG0 1479 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms