RNA–Protein interactions for RNA: ENST00000393278.6

MBD4-202, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

TSL 1 (best) BASIC

Gene MBD4, Length 1,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-202ENST00000393278 NISCHQ9Y2I1 1504 aa39.75■■■■□ 3.95
MBD4-202ENST00000393278 CCDC180Q9P1Z9 1646 aa34.67■■■■□ 3.14
MBD4-202ENST00000393278 ZCCHC6Q5VYS8 1495 aaKnown RBP33.41■■■□□ 2.94
MBD4-202ENST00000393278 DCAF1Q9Y4B6 1507 aa32.89■■■□□ 2.86
MBD4-202ENST00000393278 ABCC9O60706 1549 aa32.76■■■□□ 2.84
MBD4-202ENST00000393278 DCAF8L2P0C7V8 631 aa32.75■■■□□ 2.83
MBD4-202ENST00000393278 MYO15BQ96JP2 1530 aa32.51■■■□□ 2.8
MBD4-202ENST00000393278 SHROOM4Q9ULL8 1493 aa32.37■■■□□ 2.77
MBD4-202ENST00000393278 NACADO15069 1562 aa32.29■■■□□ 2.76
MBD4-202ENST00000393278 RB1CC1Q8TDY2 1594 aa32.01■■■□□ 2.71
MBD4-202ENST00000393278 SCRIBQ14160 1630 aa31.86■■■□□ 2.69
MBD4-202ENST00000393278 UNC13AQ9UPW8 1703 aa31.35■■■□□ 2.61
MBD4-202ENST00000393278 SUPT5HO00267 1087 aaKnown RBP31.13■■■□□ 2.57
MBD4-202ENST00000393278 BICRAQ9NZM4 1560 aa31.05■■■□□ 2.56
MBD4-202ENST00000393278 PABPN1Q86U42 306 aaKnown RBP eCLIP30.88■■■□□ 2.53
MBD4-202ENST00000393278 CECR2Q9BXF3 1484 aa30.88■■■□□ 2.53
MBD4-202ENST00000393278 RSF1Q96T23 1441 aaPredicted RBP30.83■■■□□ 2.53
MBD4-202ENST00000393278 MROH2BQ7Z745 1585 aa30.71■■■□□ 2.51
MBD4-202ENST00000393278 BAZ1AQ9NRL2 1556 aaPredicted RBP30.7■■■□□ 2.5
MBD4-202ENST00000393278 SMARCA4P51532 1647 aa30.56■■■□□ 2.48
MBD4-202ENST00000393278 WIZO95785 1651 aa30.44■■■□□ 2.46
MBD4-202ENST00000393278 PEG3Q9GZU2 1588 aa30.2■■■□□ 2.43
MBD4-202ENST00000393278 TOP2AP11388 1531 aaKnown RBP30.15■■■□□ 2.42
MBD4-202ENST00000393278 EIF4G1Q04637 1599 aaKnown RBP30.11■■■□□ 2.41
MBD4-202ENST00000393278 ATAD2BQ9ULI0 1458 aa30.06■■■□□ 2.4
MBD4-202ENST00000393278 SMARCA2P51531 1590 aa30.04■■■□□ 2.4
MBD4-202ENST00000393278 BAZ1BQ9UIG0 1483 aaKnown RBP29.88■■■□□ 2.37
MBD4-202ENST00000393278 CHIC1Q5VXU3 224 aa29.83■■■□□ 2.37
MBD4-202ENST00000393278 CCDC88BA6NC98 1476 aa29.83■■■□□ 2.37
MBD4-202ENST00000393278 NCAPD3P42695 1498 aa29.81■■■□□ 2.36
MBD4-202ENST00000393278 HMGXB3Q12766 1538 aa29.77■■■□□ 2.36
MBD4-202ENST00000393278 CC2D2AQ9P2K1 1620 aa29.66■■■□□ 2.34
MBD4-202ENST00000393278 TRIM41Q8WV44 630 aa29.29■■■□□ 2.28
MBD4-202ENST00000393278 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
MBD4-202ENST00000393278 CFTRP13569 1480 aa29.14■■■□□ 2.26
MBD4-202ENST00000393278 CADPSQ9ULU8 1353 aa29.04■■■□□ 2.24
MBD4-202ENST00000393278 WRNQ14191 1432 aaPredicted RBP eCLIP29.01■■■□□ 2.24
MBD4-202ENST00000393278 DNAJC5BQ9UF47 199 aa28.99■■■□□ 2.23
MBD4-202ENST00000393278 PRDM2Q13029 1718 aa28.98■■■□□ 2.23
MBD4-202ENST00000393278 SYNJ1O43426 1573 aa28.9■■■□□ 2.22
MBD4-202ENST00000393278 LAMC3Q9Y6N6 1575 aa28.79■■■□□ 2.2
MBD4-202ENST00000393278 TOP2BQ02880 1626 aa28.79■■■□□ 2.2
MBD4-202ENST00000393278 NESP48681 1621 aa28.76■■■□□ 2.2
MBD4-202ENST00000393278 BIVM-ERCC5R4GMW8 1640 aa28.76■■■□□ 2.2
MBD4-202ENST00000393278 FAM9AQ8IZU1 332 aaPredicted RBP28.74■■■□□ 2.19
MBD4-202ENST00000393278 CUX1P39880 1505 aa28.71■■■□□ 2.19
MBD4-202ENST00000393278 FANCD2Q9BXW9 1451 aa28.71■■■□□ 2.19
MBD4-202ENST00000393278 LOC105371045A0A1W2PR82 267 aa28.67■■■□□ 2.18
MBD4-202ENST00000393278 SOGA1O94964 1423 aa28.64■■■□□ 2.18
MBD4-202ENST00000393278 EEA1Q15075 1411 aa28.62■■■□□ 2.17
MBD4-202ENST00000393278 PDS5BQ9NTI5 1447 aa28.56■■■□□ 2.16
MBD4-202ENST00000393278 RUSC2Q8N2Y8 1516 aa28.53■■■□□ 2.16
MBD4-202ENST00000393278 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
MBD4-202ENST00000393278 DNMBPQ6XZF7 1577 aa28.46■■■□□ 2.15
MBD4-202ENST00000393278 CSRNP3Q8WYN3 585 aa28.43■■■□□ 2.14
MBD4-202ENST00000393278 KIF21AQ7Z4S6 1674 aa28.41■■■□□ 2.14
MBD4-202ENST00000393278 TOPBP1Q92547 1522 aa28.41■■■□□ 2.14
MBD4-202ENST00000393278 FGD5Q6ZNL6 1462 aa28.4■■■□□ 2.14
MBD4-202ENST00000393278 URB2Q14146 1524 aaKnown RBP28.36■■■□□ 2.13
MBD4-202ENST00000393278 EHMT2Q96KQ7 1210 aa28.3■■■□□ 2.12
MBD4-202ENST00000393278 KIF27Q86VH2 1401 aa28.28■■■□□ 2.12
MBD4-202ENST00000393278 POLA1P09884 1462 aaPredicted RBP28.27■■■□□ 2.12
MBD4-202ENST00000393278 KIF21BO75037 1637 aa28.24■■■□□ 2.11
MBD4-202ENST00000393278 CUX2O14529 1486 aa28.21■■■□□ 2.11
MBD4-202ENST00000393278 GOLGA3Q08378 1498 aa28.21■■■□□ 2.11
MBD4-202ENST00000393278 MRC2Q9UBG0 1479 aa28.2■■■□□ 2.11
MBD4-202ENST00000393278 RAD54L2Q9Y4B4 1467 aa28.16■■■□□ 2.1
MBD4-202ENST00000393278 ABCA10Q8WWZ4 1543 aa28.16■■■□□ 2.1
MBD4-202ENST00000393278 TNIKQ9UKE5 1360 aa28.12■■■□□ 2.09
MBD4-202ENST00000393278 PRXQ9BXM0 1461 aa28.11■■■□□ 2.09
MBD4-202ENST00000393278 ERCC6Q03468 1493 aa28.09■■■□□ 2.09
MBD4-202ENST00000393278 RAPGEF2Q9Y4G8 1499 aa28.07■■■□□ 2.08
MBD4-202ENST00000393278 WDR97A6NE52 1622 aa28.06■■■□□ 2.08
MBD4-202ENST00000393278 WDR62O43379 1518 aa28.06■■■□□ 2.08
MBD4-202ENST00000393278 ERICH3Q5RHP9 1530 aa28.05■■■□□ 2.08
MBD4-202ENST00000393278 IGF1RP08069 1367 aa28.04■■■□□ 2.08
MBD4-202ENST00000393278 UBTFP17480 764 aaKnown RBP28.03■■■□□ 2.08
MBD4-202ENST00000393278 TARBP1Q13395 1621 aaKnown RBP27.98■■■□□ 2.07
MBD4-202ENST00000393278 THOC2Q8NI27 1593 aaKnown RBP27.98■■■□□ 2.07
MBD4-202ENST00000393278 CEP162Q5TB80 1403 aa27.96■■■□□ 2.07
MBD4-202ENST00000393278 ABCA5Q8WWZ7 1642 aa27.93■■■□□ 2.06
MBD4-202ENST00000393278 CARMIL1Q5VZK9 1371 aa27.89■■■□□ 2.06
MBD4-202ENST00000393278 TDRD9Q8NDG6 1382 aaKnown RBP27.88■■■□□ 2.05
MBD4-202ENST00000393278 GAPVD1Q14C86 1478 aa27.86■■■□□ 2.05
MBD4-202ENST00000393278 IFT140Q96RY7 1462 aa27.86■■■□□ 2.05
MBD4-202ENST00000393278 CUL7Q14999 1698 aa27.83■■■□□ 2.05
MBD4-202ENST00000393278 CLIP1P30622 1438 aa27.75■■■□□ 2.03
MBD4-202ENST00000393278 AQRO60306 1485 aaKnown RBP eCLIP27.71■■■□□ 2.039e-7■■■□□ 15.4
MBD4-202ENST00000393278 ZNF608Q9ULD9 1512 aaPredicted RBP27.7■■■□□ 2.02
MBD4-202ENST00000393278 PBRM1Q86U86 1689 aa27.7■■■□□ 2.02
MBD4-202ENST00000393278 GRIN2BQ13224 1484 aa27.65■■■□□ 2.02
MBD4-202ENST00000393278 EIF4G3O43432 1585 aaKnown RBP27.61■■■□□ 2.01
MBD4-202ENST00000393278 FHAD1B1AJZ9 1412 aa27.57■■■□□ 2
MBD4-202ENST00000393278 ADAMTS12P58397 1594 aa27.57■■■□□ 2
MBD4-202ENST00000393278 RANGAP1P46060 587 aaPredicted RBP27.56■■■□□ 2
MBD4-202ENST00000393278 VPS8Q8N3P4 1428 aa27.52■■■□□ 2
MBD4-202ENST00000393278 CTTNBP2Q8WZ74 1663 aa27.5■■□□□ 1.99
MBD4-202ENST00000393278 ARAP1Q96P48 1450 aa27.49■■□□□ 1.99
MBD4-202ENST00000393278 ARHGAP35Q9NRY4 1499 aa27.48■■□□□ 1.99
MBD4-202ENST00000393278 SNAPC4Q5SXM2 1469 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms