RNA–Protein interactions for RNA: ENST00000423485.5

TOP2A-201, Transcript of DNA topoisomerase II alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP2A, Length 5,758 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP2A-201ENST00000423485 AEBP2Q6ZN18 517 aaPredicted RBP7.25□□□□□ -1.25
TOP2A-201ENST00000423485 NISCHQ9Y2I1 1504 aa6.82□□□□□ -1.32
TOP2A-201ENST00000423485 DCAF8L2P0C7V8 631 aa6.73□□□□□ -1.33
TOP2A-201ENST00000423485 CHIC1Q5VXU3 224 aa6.58□□□□□ -1.36
TOP2A-201ENST00000423485 FAM9AQ8IZU1 332 aaPredicted RBP6.52□□□□□ -1.37
TOP2A-201ENST00000423485 UTRNP46939 3433 aa6.45□□□□□ -1.38
TOP2A-201ENST00000423485 GOLGB1Q14789 3259 aaKnown RBP6.45□□□□□ -1.38
TOP2A-201ENST00000423485 SRCAPQ6ZRS2 3230 aa6.41□□□□□ -1.38
TOP2A-201ENST00000423485 PCNTO95613 3336 aa6.32□□□□□ -1.4
TOP2A-201ENST00000423485 USP34Q70CQ2 3546 aa6.24□□□□□ -1.41
TOP2A-201ENST00000423485 PHF23Q9BUL5 403 aaPredicted RBP6.16□□□□□ -1.42
TOP2A-201ENST00000423485 CENPFP49454 3210 aa6.14□□□□□ -1.43
TOP2A-201ENST00000423485 MYO15BQ96JP2 1530 aa6.11□□□□□ -1.43
TOP2A-201ENST00000423485 LAMA3Q16787 3333 aa6.06□□□□□ -1.44
TOP2A-201ENST00000423485 LAMA2P24043 3122 aaKnown RBP6.01□□□□□ -1.45
TOP2A-201ENST00000423485 MYT1LQ9UL68 1186 aa6□□□□□ -1.45
TOP2A-201ENST00000423485 TRHP20396 242 aaPredicted RBP5.97□□□□□ -1.45
TOP2A-201ENST00000423485 TRIM41Q8WV44 630 aa5.96□□□□□ -1.45
TOP2A-201ENST00000423485 FOXD1Q16676 465 aa5.92□□□□□ -1.46
TOP2A-201ENST00000423485 DCAF8L1A6NGE4 600 aa5.89□□□□□ -1.47
TOP2A-201ENST00000423485 VCANP13611 3396 aa5.89□□□□□ -1.47
TOP2A-201ENST00000423485 BRCA2P51587 3418 aa5.88□□□□□ -1.47
TOP2A-201ENST00000423485 NPM1P06748 294 aaKnown RBP eCLIP5.88□□□□□ -1.47
TOP2A-201ENST00000423485 CEP350Q5VT06 3117 aa5.86□□□□□ -1.47
TOP2A-201ENST00000423485 ZCCHC6Q5VYS8 1495 aaKnown RBP5.86□□□□□ -1.47
TOP2A-201ENST00000423485 ESF1Q9H501 851 aaKnown RBP5.84□□□□□ -1.47
TOP2A-201ENST00000423485 XIRP2A4UGR9 3374 aa5.84□□□□□ -1.47
TOP2A-201ENST00000423485 EIF4G1Q04637 1599 aaKnown RBP5.83□□□□□ -1.48
TOP2A-201ENST00000423485 ABCC9O60706 1549 aa5.8□□□□□ -1.48
TOP2A-201ENST00000423485 FBLN2P98095 1184 aa5.77□□□□□ -1.49
TOP2A-201ENST00000423485 PABPN1Q86U42 306 aaKnown RBP eCLIP5.77□□□□□ -1.49
TOP2A-201ENST00000423485 CDH23Q9H251 3354 aa5.77□□□□□ -1.49
TOP2A-201ENST00000423485 EP400Q96L91 3159 aa5.73□□□□□ -1.49
TOP2A-201ENST00000423485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.72□□□□□ -1.49
TOP2A-201ENST00000423485 HNRNPUL2Q1KMD3 747 aaKnown RBP5.72□□□□□ -1.49
TOP2A-201ENST00000423485 EHMT2Q96KQ7 1210 aa5.72□□□□□ -1.49
TOP2A-201ENST00000423485 TTBK1Q5TCY1 1321 aaPredicted RBP5.71□□□□□ -1.49
TOP2A-201ENST00000423485 UNC13AQ9UPW8 1703 aa5.71□□□□□ -1.5
TOP2A-201ENST00000423485 PLPPR3Q6T4P5 718 aa5.7□□□□□ -1.5
TOP2A-201ENST00000423485 SCAF1Q9H7N4 1312 aaKnown RBP5.68□□□□□ -1.5
TOP2A-201ENST00000423485 BCANQ96GW7 911 aa5.65□□□□□ -1.5
TOP2A-201ENST00000423485 ATP1B4Q9UN42 357 aaPredicted RBP5.65□□□□□ -1.5
TOP2A-201ENST00000423485 CCDC180Q9P1Z9 1646 aa5.65□□□□□ -1.51
TOP2A-201ENST00000423485 ERCC6Q03468 1493 aa5.64□□□□□ -1.51
TOP2A-201ENST00000423485 DNAH12Q6ZR08 3092 aa5.64□□□□□ -1.51
TOP2A-201ENST00000423485 MKI67P46013 3256 aaKnown RBP5.64□□□□□ -1.51
TOP2A-201ENST00000423485 APLP2Q06481 763 aa5.63□□□□□ -1.51
TOP2A-201ENST00000423485 DNAH14Q0VDD8 3507 aa5.62□□□□□ -1.51
TOP2A-201ENST00000423485 MYT1Q01538 1121 aa5.62□□□□□ -1.51
TOP2A-201ENST00000423485 CHMP7Q8WUX9 453 aaPredicted RBP5.62□□□□□ -1.51
TOP2A-201ENST00000423485 SPEGQ15772 3267 aa5.61□□□□□ -1.51
TOP2A-201ENST00000423485 CECR2Q9BXF3 1484 aa5.6□□□□□ -1.51
TOP2A-201ENST00000423485 ARID4BQ4LE39 1312 aaPredicted RBP5.59□□□□□ -1.51
TOP2A-201ENST00000423485 DCAF1Q9Y4B6 1507 aa5.58□□□□□ -1.52
TOP2A-201ENST00000423485 EYSQ5T1H1 3165 aa5.57□□□□□ -1.52
TOP2A-201ENST00000423485 MYO15AQ9UKN7 3530 aa5.57□□□□□ -1.52
TOP2A-201ENST00000423485 RB1CC1Q8TDY2 1594 aa5.57□□□□□ -1.52
TOP2A-201ENST00000423485 UNC80Q8N2C7 3258 aa5.55□□□□□ -1.52
TOP2A-201ENST00000423485 BICRAQ9NZM4 1560 aa5.54□□□□□ -1.52
TOP2A-201ENST00000423485 CFAP54Q96N23 3096 aa5.54□□□□□ -1.52
TOP2A-201ENST00000423485 PELP1Q8IZL8 1130 aaKnown RBP5.52□□□□□ -1.53
TOP2A-201ENST00000423485 WDFY3Q8IZQ1 3526 aa5.52□□□□□ -1.53
TOP2A-201ENST00000423485 NACADO15069 1562 aa5.51□□□□□ -1.53
TOP2A-201ENST00000423485 MROH2BQ7Z745 1585 aa5.5□□□□□ -1.53
TOP2A-201ENST00000423485 STAG3Q9UJ98 1225 aa5.5□□□□□ -1.53
TOP2A-201ENST00000423485 SHROOM4Q9ULL8 1493 aa5.49□□□□□ -1.53
TOP2A-201ENST00000423485 HAP1P54257 671 aaPredicted RBP5.49□□□□□ -1.53
TOP2A-201ENST00000423485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.49□□□□□ -1.535e-10■■■□□ 18.3
TOP2A-201ENST00000423485 RSF1Q96T23 1441 aaPredicted RBP5.49□□□□□ -1.53
TOP2A-201ENST00000423485 DNAJC5BQ9UF47 199 aa5.48□□□□□ -1.53
TOP2A-201ENST00000423485 A0A0G2JS52 829 aa5.48□□□□□ -1.53
TOP2A-201ENST00000423485 MUC3AQ02505 3323 aa5.48□□□□□ -1.53
TOP2A-201ENST00000423485 C14orf37Q86TY3 774 aa5.48□□□□□ -1.53
TOP2A-201ENST00000423485 WDR87Q6ZQQ6 2873 aa5.47□□□□□ -1.53
TOP2A-201ENST00000423485 WIZO95785 1651 aa5.47□□□□□ -1.53
TOP2A-201ENST00000423485 RANBP2P49792 3224 aaKnown RBP5.47□□□□□ -1.53
TOP2A-201ENST00000423485 MEX3CQ5U5Q3 659 aaKnown RBP5.46□□□□□ -1.53
TOP2A-201ENST00000423485 PPARGC1BQ86YN6 1023 aaKnown RBP5.46□□□□□ -1.53
TOP2A-201ENST00000423485 RUSC2Q8N2Y8 1516 aa5.45□□□□□ -1.54
TOP2A-201ENST00000423485 SENP3Q9H4L4 574 aaPredicted RBP5.44□□□□□ -1.54
TOP2A-201ENST00000423485 SF3B2Q13435 895 aaKnown RBP5.44□□□□□ -1.54
TOP2A-201ENST00000423485 OSCARQ8IYS5 282 aa5.43□□□□□ -1.54
TOP2A-201ENST00000423485 LOC105371045A0A1W2PR82 267 aa5.42□□□□□ -1.54
TOP2A-201ENST00000423485 RANGAP1P46060 587 aaPredicted RBP5.4□□□□□ -1.54
TOP2A-201ENST00000423485 SZT2Q5T011 3432 aa5.38□□□□□ -1.55
TOP2A-201ENST00000423485 REV3LO60673 3130 aa5.38□□□□□ -1.55
TOP2A-201ENST00000423485 SCRIBQ14160 1630 aa5.36□□□□□ -1.55
TOP2A-201ENST00000423485 CYB5RLQ6IPT4 315 aa5.35□□□□□ -1.55
TOP2A-201ENST00000423485 A0A0C4DFX4 3053 aa5.34□□□□□ -1.55
TOP2A-201ENST00000423485 WDFY4Q6ZS81 3184 aa5.34□□□□□ -1.55
TOP2A-201ENST00000423485 SLC4A1APQ9BWU0 796 aaKnown RBP5.34□□□□□ -1.55
TOP2A-201ENST00000423485 LRRIQ1Q96JM4 1722 aa5.34□□□□□ -1.55
TOP2A-201ENST00000423485 NPM2Q86SE8 214 aaKnown RBP5.34□□□□□ -1.56
TOP2A-201ENST00000423485 HTTP42858 3142 aa5.33□□□□□ -1.56
TOP2A-201ENST00000423485 VPS13AQ96RL7 3174 aa5.32□□□□□ -1.56
TOP2A-201ENST00000423485 LOC400499M0QZD8 3231 aa5.31□□□□□ -1.56
TOP2A-201ENST00000423485 SUPT5HO00267 1087 aaKnown RBP5.31□□□□□ -1.56
TOP2A-201ENST00000423485 CCDC88BA6NC98 1476 aa5.31□□□□□ -1.56
TOP2A-201ENST00000423485 TRIOO75962 3097 aa5.3□□□□□ -1.56
TOP2A-201ENST00000423485 CDK11AQ9UQ88 783 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms