RNA–Protein interactions for RNA: ENST00000488489.5

NECAB3-213, Transcript of N-terminal EF-hand calcium binding protein 3, humanhuman

TSL 2

Gene NECAB3, Length 2,142 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAB3-213ENST00000488489 NISCHQ9Y2I1 1504 aa45.51■■■■■ 4.88
NECAB3-213ENST00000488489 CCDC180Q9P1Z9 1646 aa39.51■■■■□ 3.91
NECAB3-213ENST00000488489 ZCCHC6Q5VYS8 1495 aaKnown RBP38.24■■■■□ 3.71
NECAB3-213ENST00000488489 DCAF8L2P0C7V8 631 aa37.68■■■■□ 3.62
NECAB3-213ENST00000488489 DCAF1Q9Y4B6 1507 aa37.55■■■■□ 3.6
NECAB3-213ENST00000488489 ABCC9O60706 1549 aa37.41■■■■□ 3.58
NECAB3-213ENST00000488489 SHROOM4Q9ULL8 1493 aa37.37■■■■□ 3.57
NECAB3-213ENST00000488489 MYO15BQ96JP2 1530 aa37.03■■■■□ 3.52
NECAB3-213ENST00000488489 NACADO15069 1562 aa36.8■■■■□ 3.48
NECAB3-213ENST00000488489 SCRIBQ14160 1630 aa36.49■■■■□ 3.43
NECAB3-213ENST00000488489 RB1CC1Q8TDY2 1594 aa36.45■■■■□ 3.43
NECAB3-213ENST00000488489 SUPT5HO00267 1087 aaKnown RBP36.01■■■■□ 3.36
NECAB3-213ENST00000488489 UNC13AQ9UPW8 1703 aa35.82■■■■□ 3.32
NECAB3-213ENST00000488489 BICRAQ9NZM4 1560 aa35.46■■■■□ 3.27
NECAB3-213ENST00000488489 CECR2Q9BXF3 1484 aa35.45■■■■□ 3.27
NECAB3-213ENST00000488489 RSF1Q96T23 1441 aaPredicted RBP35.41■■■■□ 3.26
NECAB3-213ENST00000488489 PABPN1Q86U42 306 aaKnown RBP eCLIP35.39■■■■□ 3.262e-7■■■□□ 15
NECAB3-213ENST00000488489 MROH2BQ7Z745 1585 aa35.22■■■■□ 3.23
NECAB3-213ENST00000488489 BAZ1AQ9NRL2 1556 aaPredicted RBP35.09■■■■□ 3.21
NECAB3-213ENST00000488489 SMARCA4P51532 1647 aa34.95■■■■□ 3.18
NECAB3-213ENST00000488489 WIZO95785 1651 aa34.94■■■■□ 3.18
NECAB3-213ENST00000488489 CHIC1Q5VXU3 224 aa34.52■■■■□ 3.12
NECAB3-213ENST00000488489 TOP2AP11388 1531 aaKnown RBP34.49■■■■□ 3.11
NECAB3-213ENST00000488489 PEG3Q9GZU2 1588 aa34.48■■■■□ 3.11
NECAB3-213ENST00000488489 ATAD2BQ9ULI0 1458 aa34.37■■■■□ 3.09
NECAB3-213ENST00000488489 EIF4G1Q04637 1599 aaKnown RBP34.34■■■■□ 3.09
NECAB3-213ENST00000488489 SMARCA2P51531 1590 aa34.27■■■■□ 3.08
NECAB3-213ENST00000488489 CCDC88BA6NC98 1476 aa34.23■■■■□ 3.07
NECAB3-213ENST00000488489 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
NECAB3-213ENST00000488489 NCAPD3P42695 1498 aa34.02■■■■□ 3.04
NECAB3-213ENST00000488489 HMGXB3Q12766 1538 aa33.93■■■■□ 3.02
NECAB3-213ENST00000488489 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3
NECAB3-213ENST00000488489 TRIM41Q8WV44 630 aa33.79■■■■□ 3
NECAB3-213ENST00000488489 ABCC8Q09428 1581 aa33.59■■■□□ 2.97
NECAB3-213ENST00000488489 CFTRP13569 1480 aa33.32■■■□□ 2.92
NECAB3-213ENST00000488489 WRNQ14191 1432 aaPredicted RBP eCLIP33.29■■■□□ 2.926e-7■■■■■ 33.4
NECAB3-213ENST00000488489 LOC105371045A0A1W2PR82 267 aa33.29■■■□□ 2.92
NECAB3-213ENST00000488489 FAM9AQ8IZU1 332 aaPredicted RBP33.26■■■□□ 2.92
NECAB3-213ENST00000488489 CADPSQ9ULU8 1353 aa33.18■■■□□ 2.9
NECAB3-213ENST00000488489 SYNJ1O43426 1573 aa33.17■■■□□ 2.9
NECAB3-213ENST00000488489 DNAJC5BQ9UF47 199 aa33.14■■■□□ 2.9
NECAB3-213ENST00000488489 PRDM2Q13029 1718 aa33.06■■■□□ 2.88
NECAB3-213ENST00000488489 SOGA1O94964 1423 aa33■■■□□ 2.87
NECAB3-213ENST00000488489 TOP2BQ02880 1626 aa32.98■■■□□ 2.87
NECAB3-213ENST00000488489 NESP48681 1621 aa32.93■■■□□ 2.86
NECAB3-213ENST00000488489 BIVM-ERCC5R4GMW8 1640 aa32.92■■■□□ 2.86
NECAB3-213ENST00000488489 CUX1P39880 1505 aa32.91■■■□□ 2.86
NECAB3-213ENST00000488489 RUSC2Q8N2Y8 1516 aa32.9■■■□□ 2.86
NECAB3-213ENST00000488489 EHMT2Q96KQ7 1210 aa32.85■■■□□ 2.85
NECAB3-213ENST00000488489 FANCD2Q9BXW9 1451 aa32.81■■■□□ 2.84
NECAB3-213ENST00000488489 LAMC3Q9Y6N6 1575 aa32.79■■■□□ 2.84
NECAB3-213ENST00000488489 EEA1Q15075 1411 aa32.79■■■□□ 2.84
NECAB3-213ENST00000488489 CSRNP3Q8WYN3 585 aa32.72■■■□□ 2.83
NECAB3-213ENST00000488489 PDS5BQ9NTI5 1447 aa32.56■■■□□ 2.8
NECAB3-213ENST00000488489 CEP164Q9UPV0 1460 aa32.56■■■□□ 2.8
NECAB3-213ENST00000488489 FGD5Q6ZNL6 1462 aa32.51■■■□□ 2.8
NECAB3-213ENST00000488489 DNMBPQ6XZF7 1577 aa32.5■■■□□ 2.79
NECAB3-213ENST00000488489 TOPBP1Q92547 1522 aa32.47■■■□□ 2.79
NECAB3-213ENST00000488489 KIF21AQ7Z4S6 1674 aa32.45■■■□□ 2.79
NECAB3-213ENST00000488489 URB2Q14146 1524 aaKnown RBP32.43■■■□□ 2.78
NECAB3-213ENST00000488489 KIF27Q86VH2 1401 aa32.4■■■□□ 2.78
NECAB3-213ENST00000488489 GOLGA3Q08378 1498 aa32.4■■■□□ 2.78
NECAB3-213ENST00000488489 KIF21BO75037 1637 aa32.39■■■□□ 2.78
NECAB3-213ENST00000488489 POLA1P09884 1462 aaPredicted RBP32.35■■■□□ 2.77
NECAB3-213ENST00000488489 TNIKQ9UKE5 1360 aa32.35■■■□□ 2.77
NECAB3-213ENST00000488489 UBTFP17480 764 aaKnown RBP32.33■■■□□ 2.77
NECAB3-213ENST00000488489 CUX2O14529 1486 aa32.33■■■□□ 2.77
NECAB3-213ENST00000488489 RAPGEF2Q9Y4G8 1499 aa32.3■■■□□ 2.76
NECAB3-213ENST00000488489 RAD54L2Q9Y4B4 1467 aa32.29■■■□□ 2.76
NECAB3-213ENST00000488489 PRXQ9BXM0 1461 aa32.25■■■□□ 2.75
NECAB3-213ENST00000488489 CEP162Q5TB80 1403 aa32.22■■■□□ 2.75
NECAB3-213ENST00000488489 ABCA10Q8WWZ4 1543 aa32.2■■■□□ 2.74
NECAB3-213ENST00000488489 IGF1RP08069 1367 aa32.18■■■□□ 2.74
NECAB3-213ENST00000488489 ERICH3Q5RHP9 1530 aa32.15■■■□□ 2.74
NECAB3-213ENST00000488489 MRC2Q9UBG0 1479 aa32.14■■■□□ 2.73
NECAB3-213ENST00000488489 WDR97A6NE52 1622 aa32.06■■■□□ 2.72
NECAB3-213ENST00000488489 ERCC6Q03468 1493 aa32■■■□□ 2.71
NECAB3-213ENST00000488489 CARMIL1Q5VZK9 1371 aa31.99■■■□□ 2.71
NECAB3-213ENST00000488489 TARBP1Q13395 1621 aaKnown RBP31.98■■■□□ 2.71
NECAB3-213ENST00000488489 TDRD9Q8NDG6 1382 aaKnown RBP31.97■■■□□ 2.71
NECAB3-213ENST00000488489 WDR62O43379 1518 aa31.96■■■□□ 2.71
NECAB3-213ENST00000488489 CLIP1P30622 1438 aa31.93■■■□□ 2.7
NECAB3-213ENST00000488489 ABCA5Q8WWZ7 1642 aa31.92■■■□□ 2.7
NECAB3-213ENST00000488489 GAPVD1Q14C86 1478 aa31.87■■■□□ 2.69
NECAB3-213ENST00000488489 RANGAP1P46060 587 aaPredicted RBP31.87■■■□□ 2.69
NECAB3-213ENST00000488489 PCGF6Q9BYE7 350 aa31.85■■■□□ 2.69
NECAB3-213ENST00000488489 THOC2Q8NI27 1593 aaKnown RBP31.85■■■□□ 2.69
NECAB3-213ENST00000488489 CUL7Q14999 1698 aa31.79■■■□□ 2.68
NECAB3-213ENST00000488489 IFT140Q96RY7 1462 aa31.76■■■□□ 2.67
NECAB3-213ENST00000488489 AQRO60306 1485 aaKnown RBP eCLIP31.74■■■□□ 2.672e-7■■■■■ 29.3
NECAB3-213ENST00000488489 PPARGC1BQ86YN6 1023 aaKnown RBP31.74■■■□□ 2.67
NECAB3-213ENST00000488489 TRIM26Q12899 539 aaPredicted RBP31.73■■■□□ 2.67
NECAB3-213ENST00000488489 ZNF608Q9ULD9 1512 aaPredicted RBP31.69■■■□□ 2.66
NECAB3-213ENST00000488489 VPS8Q8N3P4 1428 aa31.65■■■□□ 2.66
NECAB3-213ENST00000488489 PBRM1Q86U86 1689 aa31.64■■■□□ 2.66
NECAB3-213ENST00000488489 ARAP1Q96P48 1450 aa31.62■■■□□ 2.65
NECAB3-213ENST00000488489 ARHGAP35Q9NRY4 1499 aa31.59■■■□□ 2.65
NECAB3-213ENST00000488489 HRCP23327 699 aa31.58■■■□□ 2.65
NECAB3-213ENST00000488489 GRIN2BQ13224 1484 aa31.57■■■□□ 2.64
NECAB3-213ENST00000488489 EIF4G3O43432 1585 aaKnown RBP31.51■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms