RNA–Protein interactions for RNA: ENST00000503197.5

MBD4-204, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

TSL 1 (best) BASIC

Gene MBD4, Length 2,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-204ENST00000503197 NISCHQ9Y2I1 1504 aa35.62■■■■□ 3.29
MBD4-204ENST00000503197 CCDC180Q9P1Z9 1646 aa31.28■■■□□ 2.6
MBD4-204ENST00000503197 ABCC9O60706 1549 aa29.93■■■□□ 2.38
MBD4-204ENST00000503197 ZCCHC6Q5VYS8 1495 aaKnown RBP29.84■■■□□ 2.37
MBD4-204ENST00000503197 DCAF1Q9Y4B6 1507 aa29.47■■■□□ 2.31
MBD4-204ENST00000503197 DCAF8L2P0C7V8 631 aa29.44■■■□□ 2.3
MBD4-204ENST00000503197 MYO15BQ96JP2 1530 aa29.28■■■□□ 2.28
MBD4-204ENST00000503197 NACADO15069 1562 aa29.22■■■□□ 2.27
MBD4-204ENST00000503197 RB1CC1Q8TDY2 1594 aa29.06■■■□□ 2.24
MBD4-204ENST00000503197 SCRIBQ14160 1630 aa28.67■■■□□ 2.18
MBD4-204ENST00000503197 SHROOM4Q9ULL8 1493 aa28.67■■■□□ 2.18
MBD4-204ENST00000503197 UNC13AQ9UPW8 1703 aa28.51■■■□□ 2.15
MBD4-204ENST00000503197 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
MBD4-204ENST00000503197 PABPN1Q86U42 306 aaKnown RBP eCLIP28.12■■■□□ 2.09
MBD4-204ENST00000503197 CECR2Q9BXF3 1484 aa27.71■■■□□ 2.03
MBD4-204ENST00000503197 BAZ1AQ9NRL2 1556 aaPredicted RBP27.52■■■□□ 2
MBD4-204ENST00000503197 MROH2BQ7Z745 1585 aa27.5■■□□□ 1.99
MBD4-204ENST00000503197 SMARCA4P51532 1647 aa27.48■■□□□ 1.99
MBD4-204ENST00000503197 RSF1Q96T23 1441 aaPredicted RBP27.45■■□□□ 1.98
MBD4-204ENST00000503197 EIF4G1Q04637 1599 aaKnown RBP27.4■■□□□ 1.98
MBD4-204ENST00000503197 SUPT5HO00267 1087 aaKnown RBP27.34■■□□□ 1.97
MBD4-204ENST00000503197 WIZO95785 1651 aa27.25■■□□□ 1.95
MBD4-204ENST00000503197 PEG3Q9GZU2 1588 aa27.18■■□□□ 1.94
MBD4-204ENST00000503197 ATAD2BQ9ULI0 1458 aa27.13■■□□□ 1.93
MBD4-204ENST00000503197 CC2D2AQ9P2K1 1620 aa27.1■■□□□ 1.93
MBD4-204ENST00000503197 SMARCA2P51531 1590 aa27.09■■□□□ 1.93
MBD4-204ENST00000503197 NCAPD3P42695 1498 aa26.98■■□□□ 1.91
MBD4-204ENST00000503197 TOP2AP11388 1531 aaKnown RBP26.95■■□□□ 1.9
MBD4-204ENST00000503197 BAZ1BQ9UIG0 1483 aaKnown RBP26.93■■□□□ 1.9
MBD4-204ENST00000503197 HMGXB3Q12766 1538 aa26.91■■□□□ 1.9
MBD4-204ENST00000503197 DNAJC5BQ9UF47 199 aa26.83■■□□□ 1.89
MBD4-204ENST00000503197 CCDC88BA6NC98 1476 aa26.66■■□□□ 1.86
MBD4-204ENST00000503197 CFTRP13569 1480 aa26.25■■□□□ 1.79
MBD4-204ENST00000503197 CADPSQ9ULU8 1353 aa26.23■■□□□ 1.79
MBD4-204ENST00000503197 NESP48681 1621 aa26.16■■□□□ 1.78
MBD4-204ENST00000503197 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
MBD4-204ENST00000503197 PRDM2Q13029 1718 aa26.11■■□□□ 1.77
MBD4-204ENST00000503197 CHIC1Q5VXU3 224 aa25.98■■□□□ 1.75
MBD4-204ENST00000503197 ABCC8Q09428 1581 aa25.96■■□□□ 1.75
MBD4-204ENST00000503197 FANCD2Q9BXW9 1451 aa25.94■■□□□ 1.74
MBD4-204ENST00000503197 PDS5BQ9NTI5 1447 aa25.91■■□□□ 1.74
MBD4-204ENST00000503197 KIF21AQ7Z4S6 1674 aa25.86■■□□□ 1.73
MBD4-204ENST00000503197 WRNQ14191 1432 aaPredicted RBP eCLIP25.83■■□□□ 1.73
MBD4-204ENST00000503197 CEP164Q9UPV0 1460 aa25.82■■□□□ 1.72
MBD4-204ENST00000503197 SYNJ1O43426 1573 aa25.78■■□□□ 1.72
MBD4-204ENST00000503197 CUX1P39880 1505 aa25.75■■□□□ 1.71
MBD4-204ENST00000503197 TRIM41Q8WV44 630 aa25.75■■□□□ 1.71
MBD4-204ENST00000503197 TOP2BQ02880 1626 aa25.7■■□□□ 1.7
MBD4-204ENST00000503197 BIVM-ERCC5R4GMW8 1640 aa25.69■■□□□ 1.7
MBD4-204ENST00000503197 ERCC6Q03468 1493 aa25.68■■□□□ 1.7
MBD4-204ENST00000503197 URB2Q14146 1524 aaKnown RBP25.67■■□□□ 1.7
MBD4-204ENST00000503197 DNMBPQ6XZF7 1577 aa25.64■■□□□ 1.69
MBD4-204ENST00000503197 TOPBP1Q92547 1522 aa25.62■■□□□ 1.69
MBD4-204ENST00000503197 MRC2Q9UBG0 1479 aa25.62■■□□□ 1.69
MBD4-204ENST00000503197 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
MBD4-204ENST00000503197 WDR62O43379 1518 aa25.53■■□□□ 1.68
MBD4-204ENST00000503197 FGD5Q6ZNL6 1462 aa25.51■■□□□ 1.67
MBD4-204ENST00000503197 POLA1P09884 1462 aaPredicted RBP25.47■■□□□ 1.67
MBD4-204ENST00000503197 SOGA1O94964 1423 aa25.37■■□□□ 1.65
MBD4-204ENST00000503197 RAD54L2Q9Y4B4 1467 aa25.37■■□□□ 1.65
MBD4-204ENST00000503197 CUX2O14529 1486 aa25.35■■□□□ 1.65
MBD4-204ENST00000503197 RUSC2Q8N2Y8 1516 aa25.32■■□□□ 1.64
MBD4-204ENST00000503197 TARBP1Q13395 1621 aaKnown RBP25.31■■□□□ 1.64
MBD4-204ENST00000503197 ABCA10Q8WWZ4 1543 aa25.29■■□□□ 1.64
MBD4-204ENST00000503197 WDR97A6NE52 1622 aa25.28■■□□□ 1.64
MBD4-204ENST00000503197 FAM9AQ8IZU1 332 aaPredicted RBP25.25■■□□□ 1.63
MBD4-204ENST00000503197 IFT140Q96RY7 1462 aa25.23■■□□□ 1.63
MBD4-204ENST00000503197 EEA1Q15075 1411 aa25.21■■□□□ 1.63
MBD4-204ENST00000503197 KIF27Q86VH2 1401 aa25.2■■□□□ 1.62
MBD4-204ENST00000503197 TDRD9Q8NDG6 1382 aaKnown RBP25.14■■□□□ 1.62
MBD4-204ENST00000503197 ABCA5Q8WWZ7 1642 aa25.14■■□□□ 1.62
MBD4-204ENST00000503197 ZNF608Q9ULD9 1512 aaPredicted RBP25.13■■□□□ 1.61
MBD4-204ENST00000503197 CSRNP3Q8WYN3 585 aa25.1■■□□□ 1.61
MBD4-204ENST00000503197 AQRO60306 1485 aaKnown RBP eCLIP25.08■■□□□ 1.69e-7■■■□□ 15.4
MBD4-204ENST00000503197 GAPVD1Q14C86 1478 aa25.08■■□□□ 1.6
MBD4-204ENST00000503197 IGF1RP08069 1367 aa25.05■■□□□ 1.6
MBD4-204ENST00000503197 EIF4G3O43432 1585 aaKnown RBP25.04■■□□□ 1.6
MBD4-204ENST00000503197 PBRM1Q86U86 1689 aa24.99■■□□□ 1.59
MBD4-204ENST00000503197 ERICH3Q5RHP9 1530 aa24.98■■□□□ 1.59
MBD4-204ENST00000503197 PRXQ9BXM0 1461 aa24.96■■□□□ 1.59
MBD4-204ENST00000503197 LOC105371045A0A1W2PR82 267 aa24.95■■□□□ 1.59
MBD4-204ENST00000503197 GRIN2BQ13224 1484 aa24.95■■□□□ 1.58
MBD4-204ENST00000503197 KIF21BO75037 1637 aa24.94■■□□□ 1.58
MBD4-204ENST00000503197 CUL7Q14999 1698 aa24.9■■□□□ 1.58
MBD4-204ENST00000503197 CARMIL1Q5VZK9 1371 aa24.9■■□□□ 1.58
MBD4-204ENST00000503197 EHMT2Q96KQ7 1210 aa24.89■■□□□ 1.58
MBD4-204ENST00000503197 RAPGEF2Q9Y4G8 1499 aa24.88■■□□□ 1.57
MBD4-204ENST00000503197 GOLGA3Q08378 1498 aa24.84■■□□□ 1.57
MBD4-204ENST00000503197 SNAPC4Q5SXM2 1469 aa24.84■■□□□ 1.57
MBD4-204ENST00000503197 ADAMTS12P58397 1594 aa24.83■■□□□ 1.57
MBD4-204ENST00000503197 FHAD1B1AJZ9 1412 aa24.8■■□□□ 1.56
MBD4-204ENST00000503197 MAGI1Q96QZ7 1491 aaPredicted RBP24.79■■□□□ 1.56
MBD4-204ENST00000503197 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
MBD4-204ENST00000503197 SYNJ2O15056 1496 aa24.7■■□□□ 1.54
MBD4-204ENST00000503197 TNIKQ9UKE5 1360 aa24.68■■□□□ 1.54
MBD4-204ENST00000503197 GRIN2AQ12879 1464 aa24.65■■□□□ 1.54
MBD4-204ENST00000503197 CHMP7Q8WUX9 453 aaPredicted RBP24.62■■□□□ 1.53
MBD4-204ENST00000503197 FBLN2P98095 1184 aa24.58■■□□□ 1.53
MBD4-204ENST00000503197 CHD1O14646 1710 aa24.58■■□□□ 1.53
MBD4-204ENST00000503197 CTTNBP2Q8WZ74 1663 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms