RNA–Protein interactions for RNA: ENST00000509828.1

MBD4-208, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

TSL 2

Gene MBD4, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-208ENST00000509828 NISCHQ9Y2I1 1504 aa25.93■■□□□ 1.74
MBD4-208ENST00000509828 ABCC9O60706 1549 aa23.75■■□□□ 1.39
MBD4-208ENST00000509828 CCDC180Q9P1Z9 1646 aa23.3■■□□□ 1.32
MBD4-208ENST00000509828 DNAJC5BQ9UF47 199 aa22.51■■□□□ 1.19
MBD4-208ENST00000509828 RB1CC1Q8TDY2 1594 aa22.43■■□□□ 1.18
MBD4-208ENST00000509828 DCAF8L2P0C7V8 631 aa22.35■■□□□ 1.17
MBD4-208ENST00000509828 NACADO15069 1562 aa22.18■■□□□ 1.14
MBD4-208ENST00000509828 PABPN1Q86U42 306 aaKnown RBP eCLIP22.16■■□□□ 1.14
MBD4-208ENST00000509828 UNC13AQ9UPW8 1703 aa21.75■■□□□ 1.07
MBD4-208ENST00000509828 MYO15BQ96JP2 1530 aa21.71■■□□□ 1.07
MBD4-208ENST00000509828 BICRAQ9NZM4 1560 aa21.67■■□□□ 1.06
MBD4-208ENST00000509828 CECR2Q9BXF3 1484 aa21.42■■□□□ 1.02
MBD4-208ENST00000509828 ZCCHC6Q5VYS8 1495 aaKnown RBP21.39■■□□□ 1.01
MBD4-208ENST00000509828 SHROOM4Q9ULL8 1493 aa21.39■■□□□ 1.01
MBD4-208ENST00000509828 CC2D2AQ9P2K1 1620 aa21.36■■□□□ 1.01
MBD4-208ENST00000509828 DCAF1Q9Y4B6 1507 aa21.34■■□□□ 1.01
MBD4-208ENST00000509828 SCRIBQ14160 1630 aa21.33■■□□□ 1
MBD4-208ENST00000509828 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
MBD4-208ENST00000509828 DNAJC5Q9H3Z4 198 aa20.93■□□□□ 0.94
MBD4-208ENST00000509828 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
MBD4-208ENST00000509828 CUX2O14529 1486 aa20.54■□□□□ 0.88
MBD4-208ENST00000509828 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
MBD4-208ENST00000509828 ATAD2BQ9ULI0 1458 aa20.39■□□□□ 0.85
MBD4-208ENST00000509828 SMARCA2P51531 1590 aa20.34■□□□□ 0.85
MBD4-208ENST00000509828 NESP48681 1621 aa20.27■□□□□ 0.84
MBD4-208ENST00000509828 HMGXB3Q12766 1538 aa20.27■□□□□ 0.83
MBD4-208ENST00000509828 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
MBD4-208ENST00000509828 BAZ1BQ9UIG0 1483 aaKnown RBP20.24■□□□□ 0.83
MBD4-208ENST00000509828 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
MBD4-208ENST00000509828 PDS5BQ9NTI5 1447 aa20.06■□□□□ 0.8
MBD4-208ENST00000509828 LAMC3Q9Y6N6 1575 aa20.06■□□□□ 0.8
MBD4-208ENST00000509828 TRIM41Q8WV44 630 aa20.03■□□□□ 0.8
MBD4-208ENST00000509828 THOC2Q8NI27 1593 aaKnown RBP20.02■□□□□ 0.8
MBD4-208ENST00000509828 PEG3Q9GZU2 1588 aa20■□□□□ 0.79
MBD4-208ENST00000509828 MROH2BQ7Z745 1585 aa19.98■□□□□ 0.79
MBD4-208ENST00000509828 KIF21AQ7Z4S6 1674 aa19.92■□□□□ 0.78
MBD4-208ENST00000509828 CADPSQ9ULU8 1353 aa19.92■□□□□ 0.78
MBD4-208ENST00000509828 MRC2Q9UBG0 1479 aa19.85■□□□□ 0.77
MBD4-208ENST00000509828 WDR62O43379 1518 aa19.73■□□□□ 0.75
MBD4-208ENST00000509828 CEP164Q9UPV0 1460 aa19.73■□□□□ 0.75
MBD4-208ENST00000509828 OSCARQ8IYS5 282 aa19.71■□□□□ 0.75
MBD4-208ENST00000509828 WIZO95785 1651 aa19.71■□□□□ 0.75
MBD4-208ENST00000509828 FANCD2Q9BXW9 1451 aa19.68■□□□□ 0.74
MBD4-208ENST00000509828 CFTRP13569 1480 aa19.56■□□□□ 0.72
MBD4-208ENST00000509828 RSF1Q96T23 1441 aaPredicted RBP19.5■□□□□ 0.71
MBD4-208ENST00000509828 URB2Q14146 1524 aaKnown RBP19.48■□□□□ 0.71
MBD4-208ENST00000509828 TOP2AP11388 1531 aaKnown RBP19.45■□□□□ 0.7
MBD4-208ENST00000509828 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
MBD4-208ENST00000509828 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
MBD4-208ENST00000509828 RIMBP3CA6NJZ7 1639 aa19.3■□□□□ 0.68
MBD4-208ENST00000509828 RIMBP3BA6NNM3 1639 aa19.3■□□□□ 0.68
MBD4-208ENST00000509828 RIMBP3Q9UFD9 1639 aa19.3■□□□□ 0.68
MBD4-208ENST00000509828 CYB5RLQ6IPT4 315 aa19.29■□□□□ 0.68
MBD4-208ENST00000509828 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
MBD4-208ENST00000509828 FBLN2P98095 1184 aa19.27■□□□□ 0.68
MBD4-208ENST00000509828 TRHP20396 242 aaPredicted RBP19.25■□□□□ 0.67
MBD4-208ENST00000509828 TOPBP1Q92547 1522 aa19.25■□□□□ 0.67
MBD4-208ENST00000509828 ARHGEF11O15085 1522 aa19.24■□□□□ 0.67
MBD4-208ENST00000509828 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
MBD4-208ENST00000509828 PRDM2Q13029 1718 aa19.21■□□□□ 0.67
MBD4-208ENST00000509828 AQRO60306 1485 aaKnown RBP eCLIP19.16■□□□□ 0.669e-7■■■□□ 15.4
MBD4-208ENST00000509828 EIF4G3O43432 1585 aaKnown RBP19.14■□□□□ 0.65
MBD4-208ENST00000509828 DNMBPQ6XZF7 1577 aa19.12■□□□□ 0.65
MBD4-208ENST00000509828 TDRD9Q8NDG6 1382 aaKnown RBP19.04■□□□□ 0.64
MBD4-208ENST00000509828 CHD1O14646 1710 aa19.03■□□□□ 0.64
MBD4-208ENST00000509828 SOGA1O94964 1423 aa19.03■□□□□ 0.64
MBD4-208ENST00000509828 CHMP7Q8WUX9 453 aaPredicted RBP19.03■□□□□ 0.64
MBD4-208ENST00000509828 POLA1P09884 1462 aaPredicted RBP19.02■□□□□ 0.63
MBD4-208ENST00000509828 TARBP1Q13395 1621 aaKnown RBP19.01■□□□□ 0.63
MBD4-208ENST00000509828 ARAP1Q96P48 1450 aa19.01■□□□□ 0.63
MBD4-208ENST00000509828 RAD54L2Q9Y4B4 1467 aa19■□□□□ 0.63
MBD4-208ENST00000509828 AEBP2Q6ZN18 517 aaPredicted RBP18.93■□□□□ 0.62
MBD4-208ENST00000509828 SNAPC4Q5SXM2 1469 aa18.92■□□□□ 0.62
MBD4-208ENST00000509828 FGD5Q6ZNL6 1462 aa18.89■□□□□ 0.61
MBD4-208ENST00000509828 SYNJ1O43426 1573 aa18.86■□□□□ 0.61
MBD4-208ENST00000509828 GRIN2BQ13224 1484 aa18.84■□□□□ 0.61
MBD4-208ENST00000509828 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
MBD4-208ENST00000509828 WDR97A6NE52 1622 aa18.81■□□□□ 0.6
MBD4-208ENST00000509828 CLASP1Q7Z460 1538 aa18.8■□□□□ 0.6
MBD4-208ENST00000509828 SYNJ2O15056 1496 aa18.8■□□□□ 0.6
MBD4-208ENST00000509828 CUX1P39880 1505 aa18.78■□□□□ 0.6
MBD4-208ENST00000509828 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
MBD4-208ENST00000509828 SUPT5HO00267 1087 aaKnown RBP18.66■□□□□ 0.58
MBD4-208ENST00000509828 PBRM1Q86U86 1689 aa18.63■□□□□ 0.57
MBD4-208ENST00000509828 ABCA10Q8WWZ4 1543 aa18.63■□□□□ 0.57
MBD4-208ENST00000509828 WRNQ14191 1432 aaPredicted RBP eCLIP18.59■□□□□ 0.57
MBD4-208ENST00000509828 GRIN2AQ12879 1464 aa18.58■□□□□ 0.56
MBD4-208ENST00000509828 ABCA5Q8WWZ7 1642 aa18.56■□□□□ 0.56
MBD4-208ENST00000509828 ERCC6L2Q5T890 1561 aa18.52■□□□□ 0.56
MBD4-208ENST00000509828 FHAD1B1AJZ9 1412 aa18.5■□□□□ 0.55
MBD4-208ENST00000509828 CEP170Q5SW79 1584 aa18.5■□□□□ 0.55
MBD4-208ENST00000509828 NPM1P06748 294 aaKnown RBP eCLIP18.49■□□□□ 0.55
MBD4-208ENST00000509828 NUP160Q12769 1436 aa18.49■□□□□ 0.55
MBD4-208ENST00000509828 ADAMTS12P58397 1594 aa18.47■□□□□ 0.55
MBD4-208ENST00000509828 JPH4Q96JJ6 628 aa18.45■□□□□ 0.54
MBD4-208ENST00000509828 PRG4Q92954 1404 aaPredicted RBP18.44■□□□□ 0.54
MBD4-208ENST00000509828 FAM69CQ0P6D2 419 aa18.41■□□□□ 0.54
MBD4-208ENST00000509828 TOP2BQ02880 1626 aa18.39■□□□□ 0.53
MBD4-208ENST00000509828 ERICH3Q5RHP9 1530 aa18.39■□□□□ 0.53
MBD4-208ENST00000509828 SHROOM2Q13796 1616 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms